SMTL ID : 1nhk.1

CRYSTAL STRUCTURE OF MYXOCOCCUS XANTHUS NUCLEOSIDE DIPHOSPHATE KINASE AND ITS INTERACTION WITH A NUCLEOTIDE SUBSTRATE AT 2.0 ANGSTROMS RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x CMP: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE(Non-covalent)

CMP.1: 9 residues within 4Å: Chain A: K.10, Y.50, H.53, F.58, L.62, T.92, I.110, N.113, H.116 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.113, A:N.113 Water bridges: A:K.10, A:R.103, A:G.117 Salt bridges: A:K.10, A:H.116 pi-Stacking: A:F.58, A:F.58 CMP.2: 11 residues within 4Å: Chain B: K.10, Y.50, H.53, F.58, L.62, T.92, R.103, I.110, D.111, N.113, H.116 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:Y.50, B:R.103, B:N.113, B:N.113 Water bridges: B:K.10, B:H.116, B:H.116 Salt bridges: B:K.10, B:H.116 pi-Stacking: B:F.58, B:F.58 CMP.3: 9 residues within 4Å: Chain C: K.10, Y.50, H.53, F.58, L.62, T.92, I.110, N.113, H.116 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:Y.50, C:N.113, C:N.113 Water bridges: C:K.10, C:H.116, C:H.116, C:G.117 Salt bridges: C:K.10, C:H.116 pi-Stacking: C:F.58, C:F.58 CMP.4: 11 residues within 4Å: Chain D: K.10, Y.50, H.53, F.58, L.62, T.92, R.103, I.110, D.111, N.113, H.116 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:R.103, D:N.113, D:N.113 Water bridges: D:K.10, D:G.117 Salt bridges: D:K.10, D:H.116 pi-Stacking: D:F.58, D:F.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Strelkov, S.V. et al., The 1.9 A crystal structure of a nucleoside diphosphate kinase complex with adenosine 3',5'-cyclic monophosphate: evidence for competitive inhibition. J.Mol.Biol. (1995)

Release Date

1995-03-31

Peptides

NUCLEOSIDE DIPHOSPHATE KINASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
L

C
R

D
L

NUCLEOSIDE DIPHOSPHATE KINASE

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