SMTL ID : 1nlk.1 (1 other biounit)

CRYSTAL STRUCTURE OF MYXOCOCCUS XANTHUS NUCLEOSIDE DIPHOSPHATE KINASE AND ITS INTERACTION WITH A NUCLEOTIDE SUBSTRATE AT 2.0 ANGSTROMS RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: H.53, D.119 Ligands: ADP.2 No protein-ligand interaction detected (PLIP) MG.3: 2 residues within 4Å: Chain B: D.119 Ligands: ADP.4 No protein-ligand interaction detected (PLIP)

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 13 residues within 4Å: Chain A: K.10, Y.50, H.53, F.58, L.62, R.86, T.92, R.103, I.110, D.111, N.113, H.116 Ligands: MG.1 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:K.10, A:R.86, A:R.86, A:T.92, A:T.92, A:T.92, A:D.111, A:N.113 Salt bridges: A:H.53, A:R.103 pi-Stacking: A:F.58, A:F.58 ADP.4: 9 residues within 4Å: Chain B: K.10, H.53, F.58, L.62, T.92, R.103, I.110, N.113 Ligands: MG.3 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:K.10, B:N.113, B:N.113 Salt bridges: B:H.53, B:R.103 pi-Stacking: B:F.58, B:F.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Williams, R.L. et al., Crystal structure of Myxococcus xanthus nucleoside diphosphate kinase and its interaction with a nucleotide substrate at 2.0 A resolution. J.Mol.Biol. (1993)

Release Date

1994-05-31

Peptides

NUCLEOSIDE DIPHOSPHATE KINASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
L

NUCLEOSIDE DIPHOSPHATE KINASE

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