SMTL ID : 1nm0.1 (1 other biounit)

Proteus mirabilis catalase in complex with formiate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.182, H.192, R.216 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.182, A:R.182, A:R.182 Salt bridges: A:R.182, A:H.192, A:R.216 SO4.2: 1 residues within 4Å: Chain A: R.423 3 PLIP interactions: 3 interactions with chain A Water bridges: A:S.420, A:R.423 Salt bridges: A:R.423 SO4.3: 3 residues within 4Å: Chain A: S.430, D.432, R.436 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.430 Water bridges: A:S.430, A:S.430, A:D.432 Salt bridges: A:R.436 SO4.4: 3 residues within 4Å: Chain A: R.182, I.221, N.223 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.223 Water bridges: A:D.181, A:D.181, A:R.182 Salt bridges: A:R.182 SO4.5: 3 residues within 4Å: Chain A: R.216, Q.218, Q.259 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.259 Salt bridges: A:R.216, A:K.257 SO4.6: 1 residues within 4Å: Chain A: R.45 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.45

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.7: 25 residues within 4Å: Chain A: R.51, M.53, H.54, R.91, G.110, F.111, A.112, V.125, G.126, N.127, P.137, F.140, G.195, S.196, H.197, L.278, F.313, M.329, R.333, S.336, Y.337, A.340, H.341, R.344 Ligands: FMT.8 27 PLIP interactions: 27 interactions with chain A, Hydrophobic interactions: A:H.54, A:V.125, A:N.127, A:P.137, A:F.140, A:F.140, A:F.140, A:F.140, A:F.140, A:L.278, A:R.333, A:Y.337, A:Y.337, A:A.340 Water bridges: A:A.112, A:A.311, A:R.344 Salt bridges: A:R.51, A:R.51, A:R.91, A:H.341, A:R.344 pi-Stacking: A:H.54, A:F.132 pi-Cation interactions: A:R.333, A:R.333 Metal complexes: A:Y.337

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.8: 6 residues within 4Å: Chain A: M.53, H.54, N.127, F.132, F.140 Ligands: HEM.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.127

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 2 residues within 4Å: Chain A: R.342, H.349 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.338, A:R.342

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Andreoletti, P. et al., Structural studies of Proteus mirabilis catalase in its ground state, oxidized state and in complex with formic acid. Acta Crystallogr.,Sect.D (2003)

Release Date

2004-01-20

Peptides

Catalase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Catalase

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