SMTL ID : 1nm6.1

thrombin in complex with selective macrocyclic inhibitor at 1.8A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x L86: (11S)-11-BENZYL-6-CHLORO-1,2,10,11,12,13,14,15,16,17,18,19-DODECAHYDRO-5,9-METHANO-2,5,8,10,13,17-BENZOHEXAAZACYCLOHENI COSINE-3,24-DIONE(Non-covalent)

L86.1: 18 residues within 4Å: Chain A: H.72, Y.76, W.79, E.123, N.124, L.125, I.208, D.228, A.229, C.230, E.231, S.234, V.254, S.255, W.256, G.257, G.259, C.260 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.125, A:I.208, A:A.229, A:V.254, A:W.256, A:W.256 Hydrogen bonds: A:S.255, A:G.257, A:G.257 Water bridges: A:G.259

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nantermet, P.G. et al., Design and synthesis of potent and selective macrocyclic thrombin inhibitors. Bioorg.Med.Chem.Lett. (2003)

Release Date

2003-09-02

Peptides

thrombin: A
Hirudin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

thrombin

Hirudin

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