SMTL ID : 1zrb.1

Thrombin in complex with an azafluorenyl inhibitor 23b

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-oligomer

Ligands

1 x 062: 3-AZA-9-HYDROXY-9-FLUORENYLCARBONYL-L-PROLYL-2-AMINOMETHYL-5-CHLOROBENZYLAMIDE, N-OXIDE(Non-covalent)

062.1: 19 residues within 4Å: Chain A: H.72, Y.76, W.79, E.123, N.124, L.125, D.228, A.229, C.230, E.231, S.234, V.254, S.255, W.256, G.257, G.259, C.260, G.267, F.268 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.76, A:W.79, A:L.125, A:A.229, A:V.254, A:W.256 Hydrogen bonds: A:S.255, A:G.257, A:G.257 Water bridges: A:E.231, A:G.259, A:G.259 pi-Stacking: A:W.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stauffer, K.J. et al., 9-hydroxyazafluorenes and their use in thrombin inhibitors. J.Med.Chem. (2005)

Release Date

2005-06-07

Peptides

thrombin: A
11-peptide hirudin fragment: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

thrombin

11-peptide hirudin fragment

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