SMTL ID : 1nw3.1

Structure of the Catalytic domain of human DOT1L, a non-SET domain nucleosomal histone methyltransferase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: L.158, V.160, Y.183, R.231, T.235 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.158 Salt bridges: A:R.231

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.203, K.207, H.213 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.203, A:K.207, A:H.213 SO4.3: 4 residues within 4Å: Chain A: R.229, Q.252, E.255, R.256 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.252, A:E.255 Salt bridges: A:R.229, A:R.256

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.4: 21 residues within 4Å: Chain A: P.133, V.135, Y.136, G.137, E.138, T.139, D.161, G.163, S.164, Q.168, V.169, E.186, K.187, A.188, G.221, D.222, F.223, L.224, F.239, N.241, F.245 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.137, A:T.139, A:D.161, A:Q.168, A:K.187, A:A.188, A:D.222, A:F.223, A:N.241 pi-Stacking: A:F.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Min, J. et al., Structure of the Catalytic domain of human DOT1L, a non-SET domain nucleosomal histone methyltransferase. Cell(Cambridge,Mass.) (2003)

Release Date

2003-03-25

Peptides

histone methyltransferase DOT1L: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

histone methyltransferase DOT1L

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