SMTL ID : 1nxk.5 (4 other biounits)

Crystal structure of staurosporine bound to MAP KAP kinase 2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-12-mer

Ligands

12 x STU: STAUROSPORINE(Non-covalent)

STU.1: 16 residues within 4Å: Chain A: L.70, G.71, L.72, G.73, V.78, A.91, V.118, M.138, E.139, C.140, L.141, E.190, N.191, L.193, T.206, D.207 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.70, A:A.91, A:L.193, A:D.207 Hydrogen bonds: A:L.141, A:E.190 STU.4: 16 residues within 4Å: Chain B: L.70, G.71, L.72, G.73, V.78, A.91, K.93, M.138, E.139, C.140, L.141, E.190, N.191, L.193, T.206, D.207 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.70, B:L.70, B:L.70, B:A.91, B:K.93, B:L.193, B:D.207 Hydrogen bonds: B:L.141, B:E.190 STU.5: 17 residues within 4Å: Chain C: L.70, G.71, L.72, G.73, V.78, A.91, V.118, M.138, E.139, C.140, L.141, E.145, E.190, N.191, L.193, T.206, D.207 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:L.70, C:L.193, C:D.207 Hydrogen bonds: C:L.141, C:E.190 STU.6: 16 residues within 4Å: Chain D: L.70, G.71, L.72, G.73, V.78, A.91, K.93, M.138, E.139, C.140, L.141, E.190, N.191, L.193, T.206, D.207 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:L.70, D:L.70, D:V.78, D:V.78, D:A.91, D:K.93, D:L.193, D:D.207 Hydrogen bonds: D:L.141, D:E.190 STU.7: 16 residues within 4Å: Chain E: L.70, G.71, L.72, G.73, V.78, A.91, V.118, M.138, E.139, C.140, L.141, E.190, N.191, L.193, T.206, D.207 6 PLIP interactions: 6 interactions with chain E Hydrophobic interactions: E:L.70, E:A.91, E:L.193, E:D.207 Hydrogen bonds: E:L.141, E:E.190 STU.10: 16 residues within 4Å: Chain F: L.70, G.71, L.72, G.73, V.78, A.91, K.93, M.138, E.139, C.140, L.141, E.190, N.191, L.193, T.206, D.207 9 PLIP interactions: 9 interactions with chain F Hydrophobic interactions: F:L.70, F:L.70, F:L.70, F:A.91, F:K.93, F:L.193, F:D.207 Hydrogen bonds: F:L.141, F:E.190 STU.11: 17 residues within 4Å: Chain G: L.70, G.71, L.72, G.73, V.78, A.91, V.118, M.138, E.139, C.140, L.141, E.145, E.190, N.191, L.193, T.206, D.207 5 PLIP interactions: 5 interactions with chain G Hydrophobic interactions: G:L.70, G:L.193, G:D.207 Hydrogen bonds: G:L.141, G:E.190 STU.12: 16 residues within 4Å: Chain H: L.70, G.71, L.72, G.73, V.78, A.91, K.93, M.138, E.139, C.140, L.141, E.190, N.191, L.193, T.206, D.207 10 PLIP interactions: 10 interactions with chain H Hydrophobic interactions: H:L.70, H:L.70, H:V.78, H:V.78, H:A.91, H:K.93, H:L.193, H:D.207 Hydrogen bonds: H:L.141, H:E.190 STU.13: 16 residues within 4Å: Chain I: L.70, G.71, L.72, G.73, V.78, A.91, V.118, M.138, E.139, C.140, L.141, E.190, N.191, L.193, T.206, D.207 6 PLIP interactions: 6 interactions with chain I Hydrophobic interactions: I:L.70, I:A.91, I:L.193, I:D.207 Hydrogen bonds: I:L.141, I:E.190 STU.16: 16 residues within 4Å: Chain J: L.70, G.71, L.72, G.73, V.78, A.91, K.93, M.138, E.139, C.140, L.141, E.190, N.191, L.193, T.206, D.207 9 PLIP interactions: 9 interactions with chain J Hydrophobic interactions: J:L.70, J:L.70, J:L.70, J:A.91, J:K.93, J:L.193, J:D.207 Hydrogen bonds: J:L.141, J:E.190 STU.17: 17 residues within 4Å: Chain K: L.70, G.71, L.72, G.73, V.78, A.91, V.118, M.138, E.139, C.140, L.141, E.145, E.190, N.191, L.193, T.206, D.207 5 PLIP interactions: 5 interactions with chain K Hydrophobic interactions: K:L.70, K:L.193, K:D.207 Hydrogen bonds: K:L.141, K:E.190 STU.18: 16 residues within 4Å: Chain L: L.70, G.71, L.72, G.73, V.78, A.91, K.93, M.138, E.139, C.140, L.141, E.190, N.191, L.193, T.206, D.207 10 PLIP interactions: 10 interactions with chain L Hydrophobic interactions: L:L.70, L:L.70, L:V.78, L:V.78, L:A.91, L:K.93, L:L.193, L:D.207 Hydrogen bonds: L:L.141, L:E.190

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain B: T.195, S.196, R.198 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.195, B:S.196 Salt bridges: B:R.198 SO4.3: 4 residues within 4Å: Chain A: Q.53 Chain B: Q.53, K.56 Chain C: Q.53 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A Hydrogen bonds: B:Q.53, C:Q.53, A:Q.53 Salt bridges: B:K.56 SO4.8: 3 residues within 4Å: Chain F: T.195, S.196, R.198 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:T.195, F:S.196 Salt bridges: F:R.198 SO4.9: 4 residues within 4Å: Chain E: Q.53 Chain F: Q.53, K.56 Chain G: Q.53 4 PLIP interactions: 2 interactions with chain F, 1 interactions with chain E, 1 interactions with chain G Hydrogen bonds: F:Q.53, E:Q.53, G:Q.53 Salt bridges: F:K.56 SO4.14: 3 residues within 4Å: Chain J: T.195, S.196, R.198 3 PLIP interactions: 3 interactions with chain J Hydrogen bonds: J:T.195, J:S.196 Salt bridges: J:R.198 SO4.15: 4 residues within 4Å: Chain I: Q.53 Chain J: Q.53, K.56 Chain K: Q.53 4 PLIP interactions: 1 interactions with chain K, 1 interactions with chain I, 2 interactions with chain J Hydrogen bonds: K:Q.53, I:Q.53, J:Q.53 Salt bridges: J:K.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Underwood, K.W. et al., Catalytically active MAP KAP kinase 2 structures in complex with staurosporine and ADP reveal differences with the autoinhibited enzyme. Structure (2003)

Release Date

2003-10-14

Peptides

MAP kinase-activated protein kinase 2: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

I
A

J
B

K
C

L
D

MAP kinase-activated protein kinase 2

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