SMTL ID : 1ny3.2 (1 other biounit)

Crystal structure of ADP bound to MAP KAP kinase 2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-12-mer

Ligands

12 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain A: L.70, G.71, L.72, G.73, I.74, N.75, V.78, A.91, K.93, V.118, M.138, E.139, C.140, L.141, N.191, L.193, T.206, D.207 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:I.74, A:N.75, A:N.75, A:E.139, A:L.141, A:N.191, A:D.207 Salt bridges: A:K.93, A:K.93 ADP.2: 18 residues within 4Å: Chain B: L.70, G.71, L.72, G.73, I.74, N.75, V.78, A.91, K.93, V.118, M.138, E.139, C.140, L.141, N.191, L.193, T.206, D.207 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:I.74, B:N.75, B:N.75, B:E.139, B:L.141, B:E.145, B:N.191, B:D.207 Salt bridges: B:K.93, B:K.93 ADP.3: 18 residues within 4Å: Chain C: L.70, G.71, L.72, G.73, I.74, N.75, V.78, A.91, K.93, V.118, M.138, E.139, C.140, L.141, N.191, L.193, T.206, D.207 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:I.74, C:N.75, C:N.75, C:E.139, C:L.141, C:E.145, C:D.207 Salt bridges: C:K.93, C:K.93 ADP.4: 18 residues within 4Å: Chain D: L.70, G.71, L.72, G.73, I.74, N.75, V.78, A.91, K.93, V.118, M.138, E.139, C.140, L.141, N.191, L.193, T.206, D.207 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:I.74, D:N.75, D:N.75, D:E.139, D:L.141, D:E.145, D:N.191, D:T.206, D:D.207 Salt bridges: D:K.93, D:K.93 ADP.5: 18 residues within 4Å: Chain E: L.70, G.71, L.72, G.73, I.74, N.75, V.78, A.91, K.93, V.118, M.138, E.139, C.140, L.141, N.191, L.193, T.206, D.207 10 PLIP interactions: 10 interactions with chain E Hydrogen bonds: E:I.74, E:N.75, E:N.75, E:E.139, E:L.141, E:N.191, E:T.206, E:D.207 Salt bridges: E:K.93, E:K.93 ADP.6: 18 residues within 4Å: Chain F: L.70, G.71, L.72, G.73, I.74, N.75, V.78, A.91, K.93, V.118, M.138, E.139, C.140, L.141, N.191, L.193, T.206, D.207 10 PLIP interactions: 10 interactions with chain F Hydrogen bonds: F:I.74, F:N.75, F:N.75, F:E.139, F:L.141, F:N.191, F:T.206, F:D.207 Salt bridges: F:K.93, F:K.93 ADP.7: 18 residues within 4Å: Chain G: L.70, G.71, L.72, G.73, I.74, N.75, V.78, A.91, K.93, V.118, M.138, E.139, C.140, L.141, N.191, L.193, T.206, D.207 9 PLIP interactions: 9 interactions with chain G Hydrogen bonds: G:I.74, G:N.75, G:N.75, G:E.139, G:L.141, G:N.191, G:D.207 Salt bridges: G:K.93, G:K.93 ADP.8: 18 residues within 4Å: Chain H: L.70, G.71, L.72, G.73, I.74, N.75, V.78, A.91, K.93, V.118, M.138, E.139, C.140, L.141, N.191, L.193, T.206, D.207 10 PLIP interactions: 10 interactions with chain H Hydrogen bonds: H:I.74, H:N.75, H:N.75, H:E.139, H:L.141, H:E.145, H:N.191, H:D.207 Salt bridges: H:K.93, H:K.93 ADP.9: 18 residues within 4Å: Chain I: L.70, G.71, L.72, G.73, I.74, N.75, V.78, A.91, K.93, V.118, M.138, E.139, C.140, L.141, N.191, L.193, T.206, D.207 10 PLIP interactions: 10 interactions with chain I Hydrogen bonds: I:I.74, I:N.75, I:N.75, I:E.139, I:L.141, I:E.145, I:N.191, I:D.207 Salt bridges: I:K.93, I:K.93 ADP.10: 18 residues within 4Å: Chain J: L.70, G.71, L.72, G.73, I.74, N.75, V.78, A.91, K.93, V.118, M.138, E.139, C.140, L.141, N.191, L.193, T.206, D.207 11 PLIP interactions: 11 interactions with chain J Hydrogen bonds: J:I.74, J:N.75, J:N.75, J:E.139, J:L.141, J:E.145, J:N.191, J:T.206, J:D.207 Salt bridges: J:K.93, J:K.93 ADP.11: 18 residues within 4Å: Chain K: L.70, G.71, L.72, G.73, I.74, N.75, V.78, A.91, K.93, V.118, M.138, E.139, C.140, L.141, N.191, L.193, T.206, D.207 10 PLIP interactions: 10 interactions with chain K Hydrogen bonds: K:I.74, K:N.75, K:N.75, K:E.139, K:L.141, K:N.191, K:T.206, K:D.207 Salt bridges: K:K.93, K:K.93 ADP.12: 18 residues within 4Å: Chain L: L.70, G.71, L.72, G.73, I.74, N.75, V.78, A.91, K.93, V.118, M.138, E.139, C.140, L.141, N.191, L.193, T.206, D.207 10 PLIP interactions: 10 interactions with chain L Hydrogen bonds: L:I.74, L:N.75, L:N.75, L:E.139, L:L.141, L:N.191, L:T.206, L:D.207 Salt bridges: L:K.93, L:K.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Underwood, K.W. et al., Catalytically active MAP KAP kinase 2 structures in complex with staurosporine and ADP reveal differences with the autoinhibited enzyme. Structure (2003)

Release Date

2003-10-14

Peptides

MAP kinase-activated protein kinase 2: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

MAP kinase-activated protein kinase 2

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