SMTL ID : 1nyw.1

The high resolution structures of RmlC from Streptoccus suis in complex with dTDP-D-glucose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x DAU: 2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE(Non-covalent)

DAU.1: 16 residues within 4Å: Chain A: H.29, R.33, F.36, E.38 Chain B: Q.61, N.63, S.65, R.73, H.76, E.78, K.82, N.127, F.129, Y.140, W.146, K.151 28 PLIP interactions: 23 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:W.146, A:F.36 Hydrogen bonds: B:Q.61, B:N.63, B:S.65, B:S.65, B:R.73, B:H.76, B:E.78, B:K.82, B:N.127, A:E.38 Water bridges: B:K.82, B:K.82, B:K.82, B:K.151, B:K.151, B:K.151, B:K.151 Salt bridges: B:R.73, B:H.76, B:H.76, B:K.151, A:R.33, A:R.33 pi-Stacking: B:W.146, B:W.146, A:F.36 DAU.2: 17 residues within 4Å: Chain A: Q.61, N.63, S.65, R.73, H.76, E.78, K.82, N.127, F.129, Y.138, Y.140, W.146, D.180 Chain B: H.29, R.33, F.36, E.38 28 PLIP interactions: 21 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:W.146, A:W.146, A:W.146, B:F.36 Hydrogen bonds: A:Q.61, A:S.65, A:S.65, A:E.78, A:K.82, A:K.82, A:N.127, A:Y.138, A:Y.138, A:Y.140, B:E.38, B:E.38 Water bridges: A:E.78, A:K.151, A:S.177, B:R.33 Salt bridges: A:R.73, A:H.76, A:H.76, A:K.151, B:R.33, B:R.33 pi-Stacking: A:W.146, B:F.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, C. et al., High-Resolution Structures of RmlC from Streptococcus suis in Complex with Substrate Analogs Locate the Active Site of This Class of Enzyme. Structure (2003)

Release Date

2003-06-24

Peptides

dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase

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