SMTL ID : 1o1s.1

Structure of FPT bound to isoprenoid analog 3b

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: D.297, C.299, Y.361, H.362 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.297, B:D.297, B:C.299, B:H.362, H2O.29

1 x 1NH: (2E,6E)-8-[(3-BENZOYLBENZYL)OXY]-3,7-DIMETHYLOCTA-2,6-DIENYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)

1NH.2: 18 residues within 4Å: Chain A: K.167, Y.169, Y.203 Chain B: W.102, H.149, A.151, M.193, R.202, C.206, H.248, G.250, Y.251, C.254, R.291, K.294, Y.300, W.303, Y.361 20 PLIP interactions: 16 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:A.151, B:Y.251, A:Y.203 Hydrogen bonds: B:Y.300 Water bridges: B:R.291, B:R.291, B:R.291, B:K.294, B:K.294, B:K.294, B:K.294, A:K.167, A:K.201 Salt bridges: B:H.248, B:R.291, B:R.291, B:K.294, B:K.294, A:K.167 pi-Stacking: B:W.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Turek-Etienne, T.C. et al., Biochemical and Structural Studies with Prenyl Diphosphate Analogues Provide Insights into Isoprenoid Recognition by Protein Farnesyl Transferase. Biochemistry (2003)

Release Date

2003-05-06

Peptides

Protein farnesyltransferase alpha subunit: A
Protein farnesyltransferase beta subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein farnesyltransferase alpha subunit

Protein farnesyltransferase beta subunit

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