SMTL ID : 4gtm.1

FTase in complex with BMS analogue 11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: D.297, C.299, H.362 Ligands: 7TM.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.297, B:D.297, B:C.299, B:H.362

1 x FPP: FARNESYL DIPHOSPHATE(Non-covalent)

FPP.2: 15 residues within 4Å: Chain A: K.164, Y.200, H.201 Chain B: R.202, Y.205, H.248, G.250, Y.251, C.254, R.291, K.294, Y.300, W.303 Ligands: 7TM.3, DMS.4 22 PLIP interactions: 18 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:R.202, B:R.202, B:Y.205, B:Y.251, B:W.303, A:Y.200 Hydrogen bonds: B:Y.300 Water bridges: B:R.291, B:R.291, B:K.294, B:L.295, B:L.295, B:L.295, B:L.295, A:K.164, A:K.164 Salt bridges: B:H.248, B:R.291, B:R.291, B:K.294, B:K.294, A:K.164

1 x 7TM: 4-({(3R)-7-cyano-4-[(4-methoxyphenyl)sulfonyl]-1-[(1-methyl-1H-imidazol-5-yl)methyl]-2,3,4,5-tetrahydro-1H-1,4-benzodiazepin-3-yl}methyl)phenyl hexylcarbamate(Non-covalent)

7TM.3: 22 residues within 4Å: Chain B: Y.93, L.96, A.98, S.99, P.101, W.102, W.106, H.149, A.151, P.152, R.202, D.297, C.299, D.352, D.359, F.360, Y.361, H.362 Ligands: ZN.1, FPP.2, DMS.4, DMS.5 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:L.96, B:W.102, B:W.106, B:A.151, B:P.152, B:P.152, B:Y.361 Hydrogen bonds: B:F.360, B:Y.361 Water bridges: B:S.99 pi-Stacking: B:Y.361

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 6 residues within 4Å: Chain B: D.297, C.299, Y.300, Y.361 Ligands: FPP.2, 7TM.3 No protein-ligand interaction detected (PLIP) DMS.5: 6 residues within 4Å: Chain B: A.92, Y.93, L.96, R.358, D.359 Ligands: 7TM.3 1 PLIP interactions: 1 interactions with chain B pi-Cation interactions: B:Y.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stigter, E.A. et al., Development of Selective, Potent RabGGTase Inhibitors. J.Med.Chem. (2012)

Release Date

2012-10-24

Peptides

Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha: A
Protein farnesyltransferase subunit beta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha

Protein farnesyltransferase subunit beta

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