SMTL ID : 1oae.1 (1 other biounit)

Crystal structure of the reduced form of cytochrome c" from Methylophilus methylotrophus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x HEC: HEME C(Covalent)

HEC.1: 17 residues within 4Å: Chain A: F.34, A.48, C.49, C.52, H.53, N.63, I.70, P.71, L.73, R.81, E.91, F.92, H.95, I.99, L.100, F.112 Ligands: SO4.6 12 PLIP interactions: 12 interactions with chain A, Hydrophobic interactions: A:F.34, A:I.70, A:L.73, A:L.73, A:I.99, A:I.99, A:L.100 Water bridges: A:R.81, A:R.81 Salt bridges: A:R.81, A:H.95 Metal complexes: A:H.53

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: P.26, S.27, I.28, T.29 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.28, A:T.29, A:T.29 GOL.3: 4 residues within 4Å: Chain A: F.34, R.37, L.100, E.108 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.37, A:R.37 Water bridges: A:E.108, A:E.108, A:E.108 GOL.4: 2 residues within 4Å: Chain A: I.33, R.37 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.37 Water bridges: A:N.36, A:K.38

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 1 residues within 4Å: Chain A: K.7 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.7, A:K.7 Salt bridges: A:K.7 SO4.6: 6 residues within 4Å: Chain A: K.80, R.81, F.82, V.88, E.91 Ligands: HEC.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.80, A:F.82, A:T.83, A:E.91 Water bridges: A:R.81, A:R.81 Salt bridges: A:R.81 SO4.7: 2 residues within 4Å: Chain A: N.59, V.60 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.60, A:V.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Enguita, F.J. et al., Structural Evidence for a Proton Transfer Pathway Coupled with Haem Reduction of Cytochrome C" from Methylophilus Methylotrophus. J.Biol.Inorg.Chem. (2006)

Release Date

2004-03-26

Peptides

CYTOCHROME C": A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CYTOCHROME C"

Related Entries With Identical Sequence