SMTL ID : 1oan.1

Crystal structure of the dengue 2 virus envelope protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)(Post Translational Modification)

NAG-NAG-BMA-FUC.1: 7 residues within 4Å: Chain A: E.147, H.149, N.153, T.155, K.157, H.158 Chain B: G.102 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.147, A:K.157 Hydrophobic interactions: A:K.157 NAG-NAG-BMA-FUC.2: 7 residues within 4Å: Chain A: G.102 Chain B: E.147, H.149, N.153, T.155, K.157, H.158 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.147, B:K.157 Hydrophobic interactions: B:K.157

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 1 residues within 4Å: Chain A: H.346 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain A: N.67, R.89, M.118 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.67 NAG.5: 3 residues within 4Å: Chain B: N.67, R.89, M.118 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Modis, Y. et al., A Ligand-Binding Pocket in the Dengue Virus Envelope Glycoprotein. Proc.Natl.Acad.Sci.USA (2003)

Release Date

2003-05-16

Peptides

ENVELOPE GLYCOPROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ENVELOPE GLYCOPROTEIN

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