SMTL ID : 1oke.1

Crystal structure of the dengue 2 virus envelope protein in complex with n-octyl-beta-D-glucoside

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- FUL: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-FUL.1: 6 residues within 4Å: Chain A: E.147, H.149, N.153, K.157, H.158 Chain B: G.102 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.157 NAG-NAG-BMA-FUL.2: 6 residues within 4Å: Chain A: G.102 Chain B: E.147, H.149, N.153, K.157, H.158 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.157

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: N.67, R.89 No protein-ligand interaction detected (PLIP) NAG.5: 2 residues within 4Å: Chain B: N.67, R.89 No protein-ligand interaction detected (PLIP)

2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.4: 11 residues within 4Å: Chain A: T.48, E.49, A.50, F.193, A.205, L.207, I.270, Q.271, S.274, L.277, T.280 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.193, A:L.207, A:L.207, A:I.270 Hydrogen bonds: A:E.49, A:Q.271, A:Q.271 BOG.6: 10 residues within 4Å: Chain B: T.48, E.49, A.50, L.135, F.193, Q.200, L.207, I.270, Q.271, T.280 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:T.48, B:L.135, B:F.193, B:F.193, B:L.207, B:L.207, B:I.270 Hydrogen bonds: B:E.49, B:E.49, B:Q.200, B:Q.271, B:Q.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Modis, Y. et al., A Ligand-Binding Pocket in the Dengue Virus Envelope Glycoprotein. Proc.Natl.Acad.Sci.USA (2003)

Release Date

2003-07-24

Peptides

MAJOR ENVELOPE PROTEIN E: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MAJOR ENVELOPE PROTEIN E

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