- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x TDX: THYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE(Non-covalent)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.2: 29 residues within 4Å:- Chain A: G.11, A.13, G.14, F.15, I.16, D.37, K.38, L.39, T.40, A.42, G.43, G.61, D.62, I.63, Y.82, A.83, A.84, S.86, T.101, V.123, S.124, Y.161, K.165, C.188, S.189, N.190, N.191, H.233
- Ligands: TDX.1
27 PLIP interactions:27 interactions with chain A- Hydrophobic interactions: A:I.16
- Hydrogen bonds: A:A.13, A:F.15, A:I.16, A:G.17, A:K.38, A:L.39, A:T.40, A:T.40, A:D.62, A:D.62, A:I.63, A:Y.82, A:A.84, A:S.86, A:K.165, A:N.191, A:N.191
- Water bridges: A:G.14, A:S.86, A:N.191, A:Q.196, A:Q.196, A:H.197, A:K.200
- Salt bridges: A:K.200, A:K.200
NAD.6: 28 residues within 4Å:- Chain B: G.11, A.13, G.14, F.15, I.16, D.37, K.38, L.39, T.40, A.42, G.43, G.61, D.62, I.63, Y.82, A.83, A.84, S.86, T.101, V.123, S.124, Y.161, K.165, C.188, S.189, N.190, N.191
- Ligands: TDX.7
27 PLIP interactions:27 interactions with chain B- Hydrophobic interactions: B:I.16
- Hydrogen bonds: B:A.13, B:F.15, B:I.16, B:G.17, B:K.38, B:L.39, B:T.40, B:T.40, B:G.43, B:D.62, B:I.63, B:Y.82, B:A.84, B:S.86, B:T.101, B:Y.161, B:K.165, B:N.191, B:N.191, B:Q.196
- Water bridges: B:G.14, B:Y.41, B:S.86, B:H.197
- Salt bridges: B:K.200, B:K.200
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 5 residues within 4Å:- Chain A: K.258, T.309, D.310, F.311, S.312
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:F.311, A:S.312
- Salt bridges: A:K.258
SO4.4: 2 residues within 4Å:- Chain A: L.52, G.53
1 PLIP interactions:1 interactions with chain A- Water bridges: A:Y.25
SO4.5: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Beis, K. et al., The Structure of Nadh in the Enzyme Dtdp-D-Glucose Dehydratase (Rmlb). J.Am.Chem.Soc. (2003)
- Release Date
- 2003-10-02
- Peptides
- DTDP-GLUCOSE 4,6-DEHYDRATASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x TDX: THYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE(Non-covalent)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Beis, K. et al., The Structure of Nadh in the Enzyme Dtdp-D-Glucose Dehydratase (Rmlb). J.Am.Chem.Soc. (2003)
- Release Date
- 2003-10-02
- Peptides
- DTDP-GLUCOSE 4,6-DEHYDRATASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B