SMTL ID : 1of4.1

Structural and thermodynamic dissection of specific mannan recognition by a carbohydrate-binding module, TmCBM27

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x BMA- BMA- BMA- BMA- BMA: beta-D-mannopyranose-(1-4)-beta-D-mannopyranose-(1-4)-beta-D-mannopyranose-(1-4)-beta-D-mannopyranose-(1-4)-beta-D-mannopyranose

BMA-BMA-BMA-BMA-BMA.1: 12 residues within 4Å: Chain A: S.28, T.30, W.31, D.62, W.63, E.65, R.67, R.98, Y.100, W.107, K.109, D.113 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.28, A:R.67

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: E.13, V.14, D.15, F.16, S.17, S.18, E.21 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.15, A:S.17, A:S.18, A:S.18 Water bridges: A:E.13, A:E.21 GOL.3: 3 residues within 4Å: Chain A: E.123, R.134, H.136 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.123, A:R.134, A:R.134, A:H.136

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 4 residues within 4Å: Chain A: D.15, G.47, G.49, D.168 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.47, A:G.49, A:D.168, H2O.1, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boraston, A.B. et al., Structural and Thermodynamic Dissection of Specific Mannan Recognition by a Carbohydrate Binding Module, Tmcbm27. Structure (2003)

Release Date

2003-04-17

Peptides

BETA-MANNOSIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-MANNOSIDASE

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