- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- hetero-6-12-mer
- Ligands
- 6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 24 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 3 residues within 4Å:- Chain A: D.123
- Ligands: ADP.1, PO4.3
No protein-ligand interaction detected (PLIP)MG.4: 3 residues within 4Å:- Chain A: E.124
- Chain B: E.188
- Ligands: PO4.3
5 PLIP interactions:1 interactions with chain B, 1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: B:E.188, A:E.124, H2O.1, H2O.1, H2O.2
MG.6: 3 residues within 4Å:- Chain B: D.123
- Ligands: ADP.5, PO4.7
No protein-ligand interaction detected (PLIP)MG.8: 3 residues within 4Å:- Chain B: E.124
- Chain M: E.188
- Ligands: PO4.7
5 PLIP interactions:1 interactions with chain B, 1 interactions with chain M, 3 Ligand-Water interactions- Metal complexes: B:E.124, M:E.188, H2O.2, H2O.6, H2O.6
MG.9: 4 residues within 4Å:- Chain C: G.157, C.160, V.161, T.163
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:G.157, C:C.160, C:T.163
MG.10: 4 residues within 4Å:- Chain D: G.157, C.160, V.161, T.163
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:G.157, D:C.160, D:T.163
MG.11: 3 residues within 4Å:- Chain E: G.157, C.160, T.163
3 PLIP interactions:3 interactions with chain E- Metal complexes: E:G.157, E:C.160, E:T.163
MG.12: 3 residues within 4Å:- Chain F: G.157, C.160, T.163
3 PLIP interactions:3 interactions with chain F- Metal complexes: F:G.157, F:C.160, F:T.163
MG.14: 3 residues within 4Å:- Chain G: D.123
- Ligands: ADP.13, PO4.15
No protein-ligand interaction detected (PLIP)MG.16: 3 residues within 4Å:- Chain G: E.124
- Chain H: E.188
- Ligands: PO4.15
5 PLIP interactions:1 interactions with chain H, 1 interactions with chain G, 3 Ligand-Water interactions- Metal complexes: H:E.188, G:E.124, H2O.3, H2O.3, H2O.4
MG.18: 3 residues within 4Å:- Chain H: D.123
- Ligands: ADP.17, PO4.19
No protein-ligand interaction detected (PLIP)MG.20: 3 residues within 4Å:- Chain A: E.188
- Chain H: E.124
- Ligands: PO4.19
5 PLIP interactions:1 interactions with chain A, 1 interactions with chain H, 3 Ligand-Water interactions- Metal complexes: A:E.188, H:E.124, H2O.1, H2O.1, H2O.4
MG.21: 4 residues within 4Å:- Chain I: G.157, C.160, V.161, T.163
3 PLIP interactions:3 interactions with chain I- Metal complexes: I:G.157, I:C.160, I:T.163
MG.22: 4 residues within 4Å:- Chain J: G.157, C.160, V.161, T.163
3 PLIP interactions:3 interactions with chain J- Metal complexes: J:G.157, J:C.160, J:T.163
MG.23: 3 residues within 4Å:- Chain K: G.157, C.160, T.163
3 PLIP interactions:3 interactions with chain K- Metal complexes: K:G.157, K:C.160, K:T.163
MG.24: 3 residues within 4Å:- Chain L: G.157, C.160, T.163
3 PLIP interactions:3 interactions with chain L- Metal complexes: L:G.157, L:C.160, L:T.163
MG.26: 3 residues within 4Å:- Chain M: D.123
- Ligands: ADP.25, PO4.27
No protein-ligand interaction detected (PLIP)MG.28: 3 residues within 4Å:- Chain M: E.124
- Chain N: E.188
- Ligands: PO4.27
5 PLIP interactions:1 interactions with chain M, 1 interactions with chain N, 3 Ligand-Water interactions- Metal complexes: M:E.124, N:E.188, H2O.5, H2O.6, H2O.7
MG.30: 3 residues within 4Å:- Chain N: D.123
- Ligands: ADP.29, PO4.31
No protein-ligand interaction detected (PLIP)MG.32: 3 residues within 4Å:- Chain G: E.188
- Chain N: E.124
- Ligands: PO4.31
5 PLIP interactions:1 interactions with chain N, 1 interactions with chain G, 3 Ligand-Water interactions- Metal complexes: N:E.124, G:E.188, H2O.3, H2O.4, H2O.7
MG.33: 4 residues within 4Å:- Chain O: G.157, C.160, V.161, T.163
3 PLIP interactions:3 interactions with chain O- Metal complexes: O:G.157, O:C.160, O:T.163
MG.34: 4 residues within 4Å:- Chain P: G.157, C.160, V.161, T.163
3 PLIP interactions:3 interactions with chain P- Metal complexes: P:G.157, P:C.160, P:T.163
MG.35: 3 residues within 4Å:- Chain Q: G.157, C.160, T.163
3 PLIP interactions:3 interactions with chain Q- Metal complexes: Q:G.157, Q:C.160, Q:T.163
MG.36: 3 residues within 4Å:- Chain R: G.157, C.160, T.163
3 PLIP interactions:3 interactions with chain R- Metal complexes: R:G.157, R:C.160, R:T.163
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.3: 12 residues within 4Å:- Chain A: G.57, P.58, T.59, G.60, K.63, D.123, E.124, A.176
- Chain B: E.188
- Ligands: ADP.1, MG.2, MG.4
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:T.59, A:G.60, A:D.123
- Water bridges: A:K.63, A:K.63
- Salt bridges: A:K.63
PO4.7: 10 residues within 4Å:- Chain B: G.57, P.58, T.59, G.60, K.63, E.124
- Chain M: E.188
- Ligands: ADP.5, MG.6, MG.8
8 PLIP interactions:6 interactions with chain B, 2 interactions with chain M- Hydrogen bonds: B:T.59, B:G.60
- Water bridges: B:D.123, B:D.123, B:D.123, M:E.188, M:E.188
- Salt bridges: B:K.63
PO4.15: 12 residues within 4Å:- Chain G: G.57, P.58, T.59, G.60, K.63, D.123, E.124, A.176
- Chain H: E.188
- Ligands: ADP.13, MG.14, MG.16
6 PLIP interactions:6 interactions with chain G- Hydrogen bonds: G:T.59, G:G.60, G:D.123
- Water bridges: G:K.63, G:K.63
- Salt bridges: G:K.63
PO4.19: 10 residues within 4Å:- Chain A: E.188
- Chain H: G.57, P.58, T.59, G.60, K.63, E.124
- Ligands: ADP.17, MG.18, MG.20
8 PLIP interactions:6 interactions with chain H, 2 interactions with chain A- Hydrogen bonds: H:T.59, H:G.60
- Water bridges: H:D.123, H:D.123, H:D.123, A:E.188, A:E.188
- Salt bridges: H:K.63
PO4.27: 12 residues within 4Å:- Chain M: G.57, P.58, T.59, G.60, K.63, D.123, E.124, A.176
- Chain N: E.188
- Ligands: ADP.25, MG.26, MG.28
6 PLIP interactions:6 interactions with chain M- Hydrogen bonds: M:T.59, M:G.60, M:D.123
- Water bridges: M:K.63, M:K.63
- Salt bridges: M:K.63
PO4.31: 10 residues within 4Å:- Chain G: E.188
- Chain N: G.57, P.58, T.59, G.60, K.63, E.124
- Ligands: ADP.29, MG.30, MG.32
8 PLIP interactions:6 interactions with chain N, 2 interactions with chain G- Hydrogen bonds: N:T.59, N:G.60
- Water bridges: N:D.123, N:D.123, N:D.123, G:E.188, G:E.188
- Salt bridges: N:K.63
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kwon, A.R. et al., Structure and Reactivity of an Asymmetric Complex between Hslv and I-Domain Deleted Hslu, a Prokaryotic Homolog of the Eukaryotic Proteasome. J.Mol.Biol. (2003)
- Release Date
- 2003-07-03
- Peptides
- ATP-DEPENDENT HSL PROTEASE ATP-BINDING SUBUNIT HSLU: ABGHMN
ATP-DEPENDENT PROTEASE HSLV: CDEFIJKLOPQR - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
CG
BH
CM
BN
CC
HD
IE
MF
NI
HJ
IK
ML
NO
HP
IQ
MR
N
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- hetero-6-12-mer
- Ligands
- 6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 24 x MG: MAGNESIUM ION(Non-covalent)
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kwon, A.R. et al., Structure and Reactivity of an Asymmetric Complex between Hslv and I-Domain Deleted Hslu, a Prokaryotic Homolog of the Eukaryotic Proteasome. J.Mol.Biol. (2003)
- Release Date
- 2003-07-03
- Peptides
- ATP-DEPENDENT HSL PROTEASE ATP-BINDING SUBUNIT HSLU: ABGHMN
ATP-DEPENDENT PROTEASE HSLV: CDEFIJKLOPQR - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
CG
BH
CM
BN
CC
HD
IE
MF
NI
HJ
IK
ML
NO
HP
IQ
MR
N