- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- hetero-6-12-mer
- Ligands
- 6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 24 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 3 residues within 4Å:- Chain A: D.123
- Ligands: ADP.1, PO4.3
No protein-ligand interaction detected (PLIP)MG.4: 4 residues within 4Å:- Chain A: E.124
- Chain D: R.146, E.188
- Ligands: PO4.3
5 PLIP interactions:1 interactions with chain D, 1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: D:E.188, A:E.124, H2O.1, H2O.1, H2O.1
MG.6: 4 residues within 4Å:- Chain B: G.157, C.160, V.161, T.163
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:G.157, B:C.160, B:T.163
MG.7: 5 residues within 4Å:- Chain C: G.157, C.160, V.161, F.162, T.163
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:G.157, C:C.160, C:T.163
MG.9: 3 residues within 4Å:- Chain D: D.123
- Ligands: ADP.8, PO4.10
No protein-ligand interaction detected (PLIP)MG.11: 4 residues within 4Å:- Chain D: E.124
- Chain J: R.146, E.188
- Ligands: PO4.10
5 PLIP interactions:1 interactions with chain J, 1 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: J:E.188, D:E.124, H2O.1, H2O.1, H2O.1
MG.13: 4 residues within 4Å:- Chain E: G.157, C.160, V.161, T.163
3 PLIP interactions:3 interactions with chain E- Metal complexes: E:G.157, E:C.160, E:T.163
MG.14: 5 residues within 4Å:- Chain F: G.157, C.160, V.161, F.162, T.163
3 PLIP interactions:3 interactions with chain F- Metal complexes: F:G.157, F:C.160, F:T.163
MG.16: 3 residues within 4Å:- Chain G: D.123
- Ligands: ADP.15, PO4.17
No protein-ligand interaction detected (PLIP)MG.18: 4 residues within 4Å:- Chain A: R.146, E.188
- Chain G: E.124
- Ligands: PO4.17
5 PLIP interactions:1 interactions with chain A, 1 interactions with chain G, 3 Ligand-Water interactions- Metal complexes: A:E.188, G:E.124, H2O.1, H2O.1, H2O.1
MG.20: 4 residues within 4Å:- Chain H: G.157, C.160, V.161, T.163
3 PLIP interactions:3 interactions with chain H- Metal complexes: H:G.157, H:C.160, H:T.163
MG.21: 5 residues within 4Å:- Chain I: G.157, C.160, V.161, F.162, T.163
3 PLIP interactions:3 interactions with chain I- Metal complexes: I:G.157, I:C.160, I:T.163
MG.23: 3 residues within 4Å:- Chain J: D.123
- Ligands: ADP.22, PO4.24
No protein-ligand interaction detected (PLIP)MG.25: 4 residues within 4Å:- Chain J: E.124
- Chain P: R.146, E.188
- Ligands: PO4.24
5 PLIP interactions:1 interactions with chain J, 1 interactions with chain P, 3 Ligand-Water interactions- Metal complexes: J:E.124, P:E.188, H2O.1, H2O.2, H2O.2
MG.27: 4 residues within 4Å:- Chain K: G.157, C.160, V.161, T.163
3 PLIP interactions:3 interactions with chain K- Metal complexes: K:G.157, K:C.160, K:T.163
MG.28: 5 residues within 4Å:- Chain L: G.157, C.160, V.161, F.162, T.163
3 PLIP interactions:3 interactions with chain L- Metal complexes: L:G.157, L:C.160, L:T.163
MG.30: 3 residues within 4Å:- Chain M: D.123
- Ligands: ADP.29, PO4.31
No protein-ligand interaction detected (PLIP)MG.32: 4 residues within 4Å:- Chain G: R.146, E.188
- Chain M: E.124
- Ligands: PO4.31
5 PLIP interactions:1 interactions with chain M, 1 interactions with chain G, 3 Ligand-Water interactions- Metal complexes: M:E.124, G:E.188, H2O.1, H2O.1, H2O.2
MG.34: 4 residues within 4Å:- Chain N: G.157, C.160, V.161, T.163
3 PLIP interactions:3 interactions with chain N- Metal complexes: N:G.157, N:C.160, N:T.163
MG.35: 5 residues within 4Å:- Chain O: G.157, C.160, V.161, F.162, T.163
3 PLIP interactions:3 interactions with chain O- Metal complexes: O:G.157, O:C.160, O:T.163
MG.37: 3 residues within 4Å:- Chain P: D.123
- Ligands: ADP.36, PO4.38
No protein-ligand interaction detected (PLIP)MG.39: 4 residues within 4Å:- Chain M: R.146, E.188
- Chain P: E.124
- Ligands: PO4.38
5 PLIP interactions:1 interactions with chain M, 1 interactions with chain P, 3 Ligand-Water interactions- Metal complexes: M:E.188, P:E.124, H2O.2, H2O.2, H2O.2
MG.41: 4 residues within 4Å:- Chain Q: G.157, C.160, V.161, T.163
3 PLIP interactions:3 interactions with chain Q- Metal complexes: Q:G.157, Q:C.160, Q:T.163
MG.42: 5 residues within 4Å:- Chain R: G.157, C.160, V.161, F.162, T.163
3 PLIP interactions:3 interactions with chain R- Metal complexes: R:G.157, R:C.160, R:T.163
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.3: 9 residues within 4Å:- Chain A: G.57, P.58, T.59, K.63, E.124
- Chain D: E.188
- Ligands: ADP.1, MG.2, MG.4
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.59
- Water bridges: A:K.63, A:S.174
- Salt bridges: A:K.63
PO4.10: 9 residues within 4Å:- Chain D: G.57, P.58, T.59, K.63, E.124
- Chain J: E.188
- Ligands: ADP.8, MG.9, MG.11
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:T.59
- Water bridges: D:K.63, D:S.174
- Salt bridges: D:K.63
PO4.17: 9 residues within 4Å:- Chain A: E.188
- Chain G: G.57, P.58, T.59, K.63, E.124
- Ligands: ADP.15, MG.16, MG.18
4 PLIP interactions:4 interactions with chain G- Hydrogen bonds: G:T.59
- Water bridges: G:K.63, G:S.174
- Salt bridges: G:K.63
PO4.24: 9 residues within 4Å:- Chain J: G.57, P.58, T.59, K.63, E.124
- Chain P: E.188
- Ligands: ADP.22, MG.23, MG.25
4 PLIP interactions:4 interactions with chain J- Hydrogen bonds: J:T.59
- Water bridges: J:K.63, J:S.174
- Salt bridges: J:K.63
PO4.31: 9 residues within 4Å:- Chain G: E.188
- Chain M: G.57, P.58, T.59, K.63, E.124
- Ligands: ADP.29, MG.30, MG.32
4 PLIP interactions:4 interactions with chain M- Hydrogen bonds: M:T.59
- Water bridges: M:K.63, M:S.174
- Salt bridges: M:K.63
PO4.38: 9 residues within 4Å:- Chain M: E.188
- Chain P: G.57, P.58, T.59, K.63, E.124
- Ligands: ADP.36, MG.37, MG.39
4 PLIP interactions:4 interactions with chain P- Hydrogen bonds: P:T.59
- Water bridges: P:K.63, P:S.174
- Salt bridges: P:K.63
- 6 x LVS: 4-IODO-3-NITROPHENYL ACETYL-LEUCINYL-LEUCINYL-LEUCINYL-VINYLSULFONE(Covalent)
LVS.5: 15 residues within 4Å:- Chain B: T.1, Q.19, V.20, S.21, M.27, K.33, F.46, A.47, G.48, T.50, G.124, S.125
- Chain H: T.107, I.109, D.111
9 PLIP interactions:8 interactions with chain B, 1 interactions with chain H- Hydrophobic interactions: B:T.1, B:V.20, B:F.46, B:T.50, H:T.107
- Hydrogen bonds: B:S.21, B:S.21, B:G.48, B:T.50
LVS.12: 15 residues within 4Å:- Chain B: T.107, I.109, D.111
- Chain E: T.1, Q.19, V.20, S.21, M.27, K.33, F.46, A.47, G.48, T.50, G.124, S.125
9 PLIP interactions:8 interactions with chain E, 1 interactions with chain B- Hydrophobic interactions: E:T.1, E:V.20, E:F.46, E:T.50, B:T.107
- Hydrogen bonds: E:S.21, E:S.21, E:G.48, E:T.50
LVS.19: 15 residues within 4Å:- Chain H: T.1, Q.19, V.20, S.21, M.27, K.33, F.46, A.47, G.48, T.50, G.124, S.125
- Chain N: T.107, I.109, D.111
9 PLIP interactions:8 interactions with chain H, 1 interactions with chain N- Hydrophobic interactions: H:T.1, H:V.20, H:F.46, H:T.50, N:T.107
- Hydrogen bonds: H:S.21, H:S.21, H:G.48, H:T.50
LVS.26: 15 residues within 4Å:- Chain E: T.107, I.109, D.111
- Chain K: T.1, Q.19, V.20, S.21, M.27, K.33, F.46, A.47, G.48, T.50, G.124, S.125
9 PLIP interactions:8 interactions with chain K, 1 interactions with chain E- Hydrophobic interactions: K:T.1, K:V.20, K:F.46, K:T.50, E:T.107
- Hydrogen bonds: K:S.21, K:S.21, K:G.48, K:T.50
LVS.33: 15 residues within 4Å:- Chain N: T.1, Q.19, V.20, S.21, M.27, K.33, F.46, A.47, G.48, T.50, G.124, S.125
- Chain Q: T.107, I.109, D.111
9 PLIP interactions:1 interactions with chain Q, 8 interactions with chain N- Hydrophobic interactions: Q:T.107, N:T.1, N:V.20, N:F.46, N:T.50
- Hydrogen bonds: N:S.21, N:S.21, N:G.48, N:T.50
LVS.40: 15 residues within 4Å:- Chain K: T.107, I.109, D.111
- Chain Q: T.1, Q.19, V.20, S.21, M.27, K.33, F.46, A.47, G.48, T.50, G.124, S.125
9 PLIP interactions:8 interactions with chain Q, 1 interactions with chain K- Hydrophobic interactions: Q:T.1, Q:V.20, Q:F.46, Q:T.50, K:T.107
- Hydrogen bonds: Q:S.21, Q:S.21, Q:G.48, Q:T.50
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kwon, A.R. et al., Structure and Reactivity of an Asymmetric Complex between Hslv and I-Domain Deleted Hslu, a Prokaryotic Homolog of the Eukaryotic Proteasome. J.Mol.Biol. (2003)
- Release Date
- 2003-07-03
- Peptides
- ATP-DEPENDENT HSL PROTEASE ATP-BINDING SUBUNIT HSLU: ADGJMP
ATP-DEPENDENT PROTEASE HSLV: BCEFHIKLNOQR - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
AG
AJ
AM
AP
AB
GC
LE
GF
LH
GI
LK
GL
LN
GO
LQ
GR
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- hetero-6-12-mer
- Ligands
- 6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 24 x MG: MAGNESIUM ION(Non-covalent)
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 6 x LVS: 4-IODO-3-NITROPHENYL ACETYL-LEUCINYL-LEUCINYL-LEUCINYL-VINYLSULFONE(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kwon, A.R. et al., Structure and Reactivity of an Asymmetric Complex between Hslv and I-Domain Deleted Hslu, a Prokaryotic Homolog of the Eukaryotic Proteasome. J.Mol.Biol. (2003)
- Release Date
- 2003-07-03
- Peptides
- ATP-DEPENDENT HSL PROTEASE ATP-BINDING SUBUNIT HSLU: ADGJMP
ATP-DEPENDENT PROTEASE HSLV: BCEFHIKLNOQR - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
AG
AJ
AM
AP
AB
GC
LE
GF
LH
GI
LK
GL
LN
GO
LQ
GR
L