SMTL ID : 1ofr.6 (5 other biounits)

CRYSTAL STRUCTURE OF THE TYROSINE-REGULATED 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-PHOSPHATE SYNTHASE FROM SACCHAROMYCES CEREVISIAE COMPLEXED WITH PHENYLALANINE AND MANGANESE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-tetramer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)

MN.1: 4 residues within 4Å: Chain A: C.76, H.282, E.316, D.342 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.282, A:E.316, A:D.342 MN.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MN.3: 4 residues within 4Å: Chain C: C.76, H.282, E.316, D.342 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.282, C:E.316, C:D.342 MN.5: 4 residues within 4Å: Chain D: C.76, H.282, E.316, D.342 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.76, D:H.282, D:E.316, D:D.342

2 x PHE: PHENYLALANINE(Non-covalent)

PHE.4: 12 residues within 4Å: Chain C: E.21, D.22, I.25, Y.28 Chain D: T.162, P.165, Q.166, A.169, L.190, G.193, L.194, S.195 12 PLIP interactions: 4 interactions with chain C, 8 interactions with chain D, Hydrophobic interactions: C:I.25, C:I.25, D:P.165, D:Q.166, D:L.190, D:L.194 Hydrogen bonds: C:E.21, C:D.22, D:Q.166, D:G.193, D:S.195, D:S.195 PHE.6: 11 residues within 4Å: Chain C: T.162, P.165, Q.166, A.169, L.190, G.193, L.194, S.195 Chain D: E.21, D.22, Y.28 8 PLIP interactions: 4 interactions with chain C, 4 interactions with chain D, Hydrophobic interactions: C:P.165, C:Q.166, C:L.190 Hydrogen bonds: C:S.195, D:E.21, D:E.21, D:D.22, D:D.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koenig, V. et al., Substrate and Metal Complexes of 3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase from Saccharomyces Cerevisiae Provide New Insights Into the Catalytic Mechanism. J.Mol.Biol. (2004)

Release Date

2004-04-15

Peptides

PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE

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