SMTL ID : 1ohf.2 (3 other biounits)

The refined structure of Nudaurelia capensis omega virus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-20-20-mer

Ligands

20 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.182, D.207 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.182, A:D.182, A:D.207 MG.2: 3 residues within 4Å: Chain C: D.182, D.207 Chain G: G.330 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain G Metal complexes: C:D.182, C:D.207, G:G.330 MG.3: 2 residues within 4Å: Chain E: D.182, D.207 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:D.182, E:D.182, E:D.207 MG.4: 2 residues within 4Å: Chain G: D.182, D.207 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:D.182, G:D.207 MG.5: 2 residues within 4Å: Chain I: D.182, D.207 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:D.182, I:D.182, I:D.207 MG.6: 3 residues within 4Å: Chain K: D.182, D.207 Chain O: G.330 3 PLIP interactions: 2 interactions with chain K, 1 interactions with chain O Metal complexes: K:D.182, K:D.207, O:G.330 MG.7: 2 residues within 4Å: Chain M: D.182, D.207 3 PLIP interactions: 3 interactions with chain M Metal complexes: M:D.182, M:D.182, M:D.207 MG.8: 2 residues within 4Å: Chain O: D.182, D.207 2 PLIP interactions: 2 interactions with chain O Metal complexes: O:D.182, O:D.207 MG.9: 2 residues within 4Å: Chain Q: D.182, D.207 3 PLIP interactions: 3 interactions with chain Q Metal complexes: Q:D.182, Q:D.182, Q:D.207 MG.10: 3 residues within 4Å: Chain S: D.182, D.207 Chain W: G.330 3 PLIP interactions: 1 interactions with chain W, 2 interactions with chain S Metal complexes: W:G.330, S:D.182, S:D.207 MG.11: 2 residues within 4Å: Chain U: D.182, D.207 3 PLIP interactions: 3 interactions with chain U Metal complexes: U:D.182, U:D.182, U:D.207 MG.12: 2 residues within 4Å: Chain W: D.182, D.207 2 PLIP interactions: 2 interactions with chain W Metal complexes: W:D.182, W:D.207 MG.13: 2 residues within 4Å: Chain Y: D.182, D.207 3 PLIP interactions: 3 interactions with chain Y Metal complexes: Y:D.182, Y:D.182, Y:D.207 MG.14: 3 residues within 4Å: Chain 0: D.182, D.207 Chain 4: G.330 3 PLIP interactions: 2 interactions with chain 0, 1 interactions with chain 4 Metal complexes: 0:D.182, 0:D.207, 4:G.330 MG.15: 2 residues within 4Å: Chain 2: D.182, D.207 3 PLIP interactions: 3 interactions with chain 2 Metal complexes: 2:D.182, 2:D.182, 2:D.207 MG.16: 2 residues within 4Å: Chain 4: D.182, D.207 2 PLIP interactions: 2 interactions with chain 4 Metal complexes: 4:D.182, 4:D.207 MG.17: 2 residues within 4Å: Chain 6: D.182, D.207 3 PLIP interactions: 3 interactions with chain 6 Metal complexes: 6:D.182, 6:D.182, 6:D.207 MG.18: 3 residues within 4Å: Chain 8: D.182, D.207 Chain c: G.330 3 PLIP interactions: 2 interactions with chain 8, 1 interactions with chain c Metal complexes: 8:D.182, 8:D.207, c:G.330 MG.19: 2 residues within 4Å: Chain a: D.182, D.207 3 PLIP interactions: 3 interactions with chain a Metal complexes: a:D.182, a:D.182, a:D.207 MG.20: 2 residues within 4Å: Chain c: D.182, D.207 2 PLIP interactions: 2 interactions with chain c Metal complexes: c:D.182, c:D.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Helgstrand, C. et al., The Refined Structure of Nudaurelia Capensis Omega Virus Reveals Control Elements for a T = 4 Capsid Maturation. Virology (2004)

Release Date

2004-02-26

Peptides

p70: ACEGIKMOQSUWY02468ac
p70: BDFHJLNPRTVXZ13579bd

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

E
C

G
D

I
A

K
B

M
C

O
D

Q
A

S
B

U
C

W
D

Y
A

0
B

2
C

4
D

6
A

8
B

a
C

c
D

B
E

D
F

F
G

H
H

J
E

L
F

N
G

P
H

R
E

T
F

V
G

X
H

Z
E

1
F

3
G

5
H

7
E

9
F

b
G

d
H

p70

p70

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