SMTL ID : 1ohf.2 (3 other biounits)

THE REFINED STRUCTURE OF NUDAURELIA CAPENSIS OMEGA VIRUS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-20-mer

Ligands

20 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.182, D.207 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.182, A:D.182, A:D.207 MG.2: 3 residues within 4Å: Chain B: D.182, D.207 Chain D: G.330 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain D Metal complexes: B:D.182, B:D.207, D:G.330 MG.3: 2 residues within 4Å: Chain C: D.182, D.207 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.182, C:D.182, C:D.207 MG.4: 2 residues within 4Å: Chain D: D.182, D.207 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.182, D:D.207 MG.5: 2 residues within 4Å: Chain E: D.182, D.207 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:D.182, E:D.182, E:D.207 MG.6: 3 residues within 4Å: Chain F: D.182, D.207 Chain H: G.330 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain H Metal complexes: F:D.182, F:D.207, H:G.330 MG.7: 2 residues within 4Å: Chain G: D.182, D.207 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:D.182, G:D.182, G:D.207 MG.8: 2 residues within 4Å: Chain H: D.182, D.207 2 PLIP interactions: 2 interactions with chain H Metal complexes: H:D.182, H:D.207 MG.9: 2 residues within 4Å: Chain I: D.182, D.207 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:D.182, I:D.182, I:D.207 MG.10: 3 residues within 4Å: Chain J: D.182, D.207 Chain L: G.330 3 PLIP interactions: 2 interactions with chain J, 1 interactions with chain L Metal complexes: J:D.182, J:D.207, L:G.330 MG.11: 2 residues within 4Å: Chain K: D.182, D.207 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:D.182, K:D.182, K:D.207 MG.12: 2 residues within 4Å: Chain L: D.182, D.207 2 PLIP interactions: 2 interactions with chain L Metal complexes: L:D.182, L:D.207 MG.13: 2 residues within 4Å: Chain M: D.182, D.207 3 PLIP interactions: 3 interactions with chain M Metal complexes: M:D.182, M:D.182, M:D.207 MG.14: 3 residues within 4Å: Chain N: D.182, D.207 Chain P: G.330 3 PLIP interactions: 2 interactions with chain N, 1 interactions with chain P Metal complexes: N:D.182, N:D.207, P:G.330 MG.15: 2 residues within 4Å: Chain O: D.182, D.207 3 PLIP interactions: 3 interactions with chain O Metal complexes: O:D.182, O:D.182, O:D.207 MG.16: 2 residues within 4Å: Chain P: D.182, D.207 2 PLIP interactions: 2 interactions with chain P Metal complexes: P:D.182, P:D.207 MG.17: 2 residues within 4Å: Chain Q: D.182, D.207 3 PLIP interactions: 3 interactions with chain Q Metal complexes: Q:D.182, Q:D.182, Q:D.207 MG.18: 3 residues within 4Å: Chain R: D.182, D.207 Chain T: G.330 3 PLIP interactions: 1 interactions with chain T, 2 interactions with chain R Metal complexes: T:G.330, R:D.182, R:D.207 MG.19: 2 residues within 4Å: Chain S: D.182, D.207 3 PLIP interactions: 3 interactions with chain S Metal complexes: S:D.182, S:D.182, S:D.207 MG.20: 2 residues within 4Å: Chain T: D.182, D.207 2 PLIP interactions: 2 interactions with chain T Metal complexes: T:D.182, T:D.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Helgstrand, C. et al., The Refined Structure of Nudaurelia Capensis Omega Virus Reveals Control Elements for a T = 4 Capsid Maturation. Virology (2004)

Release Date

2004-02-26

Peptides

NUDAURELIA CAPENSIS OMEGA VIRUS CAPSID PROTEIN: ABCDEFGHIJKLMNOPQRST

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

I
A

J
B

K
C

L
D

M
A

N
B

O
C

P
D

Q
A

R
B

S
C

T
D

NUDAURELIA CAPENSIS OMEGA VIRUS CAPSID PROTEIN

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