SMTL ID : 1oj7.1 (1 other biounit)

STRUCTURAL GENOMICS, UNKNOWN FUNCTION CRYSTAL STRUCTURE OF E. COLI K-12 YQHD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x NZQ: 5,6-DIHYDROXY-NADP(Non-covalent)

NZQ.1: 32 residues within 4Å: Chain A: G.58, G.59, G.60, S.61, P.88, N.89, P.90, G.115, G.116, S.117, D.120, T.159, L.160, A.162, T.163, S.165, N.168, G.170, A.171, V.172, K.181, Y.200, T.203, L.204, P.205, Q.208, D.215, H.219, L.273, H.288, H.292, H.302 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:G.59, A:S.61, A:S.61, A:N.89, A:G.115, A:G.116, A:S.117, A:S.117, A:D.120, A:T.159, A:N.168, A:K.181, A:H.219, A:H.302, A:H.302 Water bridges: A:G.58, A:G.58, A:V.62, A:V.118, A:D.120, A:T.159, A:T.159, A:T.159, A:T.203, A:Q.208 NZQ.3: 33 residues within 4Å: Chain B: G.58, G.59, G.60, S.61, P.88, N.89, P.90, G.115, G.116, S.117, D.120, T.159, L.160, A.162, T.163, S.165, N.168, G.170, A.171, V.172, K.181, Y.200, T.203, L.204, P.205, Q.208, D.215, H.219, L.273, H.288, H.292, H.302 Ligands: ZN.4 22 PLIP interactions: 22 interactions with chain B Hydrogen bonds: B:G.59, B:S.61, B:S.61, B:N.89, B:G.115, B:G.116, B:S.117, B:S.117, B:D.120, B:T.159, B:N.168, B:K.181, B:H.302 Water bridges: B:G.58, B:G.58, B:V.62, B:V.118, B:D.120, B:T.159, B:T.159, B:T.159, B:T.203

1 x BO3: BORIC ACID(Non-covalent)

BO3.2: 7 residues within 4Å: Chain A: R.207, A.210, N.211, D.301, Q.304, G.359, V.360 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.211, A:D.301, A:Q.304, A:G.359

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 6 residues within 4Å: Chain B: D.215, H.219, H.288, H.302, L.306 Ligands: NZQ.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.215, B:H.219, B:H.288, B:H.302

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sulzenbacher, G. et al., Crystal Structure of E.Coli Alcohol Dehydrogenase Yqhd: Evidence of a Covalently Modified Nadp Coenzyme. J.Mol.Biol. (2004)

Release Date

2004-07-08

Peptides

HYPOTHETICAL OXIDOREDUCTASE YQHD: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

HYPOTHETICAL OXIDOREDUCTASE YQHD

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