SMTL ID : 1oo0.1

Crystal structure of the Drosophila Mago nashi-Y14 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SR: STRONTIUM ION(Non-functional Binders)

SR.1: 4 residues within 4Å: Chain A: N.38, N.40, N.43, T.45 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:N.40, A:N.43, H2O.1, H2O.1, H2O.4

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 5 residues within 4Å: Chain A: Q.128, K.131, C.132, F.135 Chain B: R.62 No protein-ligand interaction detected (PLIP) BME.3: 1 residues within 4Å: Chain A: R.28 No protein-ligand interaction detected (PLIP)

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 8 residues within 4Å: Chain A: T.105, G.106, S.107, L.108, V.111, R.121, Y.124, Y.125 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.108, A:R.121, A:Y.124, A:Y.124 Water bridges: A:L.108 MPD.5: 8 residues within 4Å: Chain A: Y.11, G.13, H.14, K.15, D.82, R.83, G.85, R.86 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:K.15

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 5 residues within 4Å: Chain A: F.22, E.24, E.26, R.34, A.36 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.34 Water bridges: A:Y.35, A:R.48 GOL.7: 4 residues within 4Å: Chain B: N.89, Q.99, V.100, D.101 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.89, B:Q.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, H. et al., Crystal structure of the Drosophila Mago nashi-Y14 complex. Genes Dev. (2003)

Release Date

2003-05-27

Peptides

Mago nashi protein: A
CG8781-PA: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Mago nashi protein

CG8781-PA

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