SMTL ID : 1or8.2 (1 other biounit)

Structure of the Predominant protein arginine methyltransferase PRMT1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 19 residues within 4Å: Chain A: H.32, L.36, R.41, G.65, S.66, G.67, I.70, L.71, I.86, E.87, C.88, S.89, G.113, K.114, V.115, E.116, E.131, M.142, T.145 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:H.32, A:G.65, A:G.67, A:C.88, A:V.115, A:E.116 Water bridges: A:G.69 Salt bridges: A:R.41 SAH.5: 19 residues within 4Å: Chain B: H.32, L.36, R.41, G.65, S.66, G.67, I.70, L.71, I.86, E.87, C.88, S.89, G.113, K.114, V.115, E.116, E.131, M.142, T.145 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:H.32, B:G.65, B:G.67, B:C.88, B:V.115, B:E.116, B:T.145 Water bridges: B:G.69 Salt bridges: B:R.41

2 x UNL: UNKNOWN LIGAND

UNL.2: 8 residues within 4Å: Chain A: D.174, Y.177, D.207, V.208, V.209, D.210, Q.213, Y.287 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.177, A:Y.177, A:V.209 Hydrogen bonds: A:V.208, A:D.210 UNL.6: 8 residues within 4Å: Chain B: D.174, Y.177, D.207, V.208, V.209, D.210, Q.213, Y.287 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:Y.177, B:Y.177, B:V.209 Hydrogen bonds: B:V.208, B:D.210

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: W.184, N.187, V.188, Y.189 Chain B: L.36, K.37, E.39 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:W.184, A:Y.189, B:L.36 GOL.4: 4 residues within 4Å: Chain A: E.298, E.299, F.301, K.325 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.299 Water bridges: A:K.325, A:K.325 GOL.7: 7 residues within 4Å: Chain A: L.36, K.37, E.39 Chain B: W.184, N.187, V.188, Y.189 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:W.184, B:Y.189, A:L.36, A:E.39 GOL.8: 4 residues within 4Å: Chain B: E.298, E.299, F.301, K.325 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.299 Water bridges: B:K.325, B:K.325

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, X. et al., Structure of the Predominant Protein Arginine Methyltransferase PRMT1 and Analysis of Its Binding to Substrate Peptides. Structure (2003)

Release Date

2003-08-26

Peptides

Protein arginine N-methyltransferase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein arginine N-methyltransferase 1

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