SMTL ID : 1p1k.1

Crystal structure of the 1L-myo-inositol 1-phosphate synthase complexed with NADH in the presence of EDTA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 27 residues within 4Å: Chain A: I.71, G.72, G.74, G.75, N.76, N.77, D.148, I.149, S.184, I.185, R.198, W.243, T.244, A.245, N.246, T.247, P.277, G.295, S.296, D.320, L.321, N.355, D.356, K.369, D.438, S.439, A.442 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:L.321, A:A.442 Hydrogen bonds: A:G.74, A:N.76, A:N.77, A:N.77, A:I.149, A:S.184, A:I.185, A:R.198, A:R.198, A:A.245, A:N.246, A:N.246, A:T.247, A:N.355, A:D.356, A:D.356, A:D.356, A:K.369 Water bridges: A:G.75, A:G.78, A:N.355, A:N.355, A:D.356 NAI.2: 30 residues within 4Å: Chain B: I.71, G.72, G.74, G.75, N.76, N.77, W.147, D.148, I.149, S.184, I.185, R.198, W.243, T.244, A.245, N.246, T.247, P.277, G.295, S.296, P.297, L.321, N.354, N.355, D.356, K.369, D.410, D.438, S.439, A.442 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:A.442 Hydrogen bonds: B:G.74, B:N.76, B:N.77, B:N.77, B:I.149, B:S.184, B:I.185, B:R.198, B:R.198, B:T.244, B:A.245, B:N.246, B:N.246, B:T.247, B:T.247, B:N.354, B:D.356, B:D.356, B:K.369 Water bridges: B:G.75, B:Y.187, B:D.356, B:D.356 NAI.3: 27 residues within 4Å: Chain C: I.71, G.72, G.74, G.75, N.76, N.77, D.148, I.149, S.184, I.185, R.198, W.243, T.244, A.245, N.246, T.247, P.277, G.295, S.296, D.320, L.321, N.355, D.356, K.369, D.438, S.439, A.442 23 PLIP interactions: 23 interactions with chain C Hydrophobic interactions: C:L.321, C:A.442 Hydrogen bonds: C:G.74, C:N.76, C:N.77, C:N.77, C:I.149, C:S.184, C:I.185, C:R.198, C:R.198, C:A.245, C:N.246, C:N.246, C:N.355, C:D.356, C:D.356, C:K.369 Water bridges: C:G.75, C:G.78, C:N.355, C:N.355, C:D.356 NAI.4: 30 residues within 4Å: Chain D: I.71, G.72, G.74, G.75, N.76, N.77, W.147, D.148, I.149, S.184, I.185, R.198, W.243, T.244, A.245, N.246, T.247, P.277, G.295, S.296, P.297, L.321, N.354, N.355, D.356, K.369, D.410, D.438, S.439, A.442 25 PLIP interactions: 25 interactions with chain D Hydrophobic interactions: D:A.442 Hydrogen bonds: D:G.74, D:N.76, D:N.77, D:N.77, D:I.149, D:S.184, D:I.185, D:R.198, D:R.198, D:A.245, D:N.246, D:N.246, D:T.247, D:T.247, D:T.247, D:N.354, D:D.356, D:D.356, D:K.369, D:D.438 Water bridges: D:G.75, D:Y.187, D:D.356, D:D.356

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jin, X. et al., Structures of NAD(+)- and NADH-bound 1-l-myo-inositol 1-phosphate synthase. Acta Crystallogr.,Sect.D (2003)

Release Date

2003-07-08

Peptides

Inositol-3-phosphate synthase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Inositol-3-phosphate synthase

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