SMTL ID : 1p3h.2 (2 other biounits)

Crystal Structure of the Mycobacterium tuberculosis chaperonin 10 tetradecamer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-heptamer

Ligands

10 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 7 residues within 4Å: Chain A: V.3, N.4, I.5, L.13, Y.80, Y.85 Ligands: MPD.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.5, A:L.13, A:Y.80 Hydrogen bonds: A:I.5 MPD.2: 3 residues within 4Å: Chain A: Q.15, E.83 Ligands: MPD.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.83 MPD.3: 3 residues within 4Å: Chain A: V.45, E.64 Ligands: MPD.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.45 Hydrogen bonds: A:E.64 MPD.4: 1 residues within 4Å: Ligands: MPD.3 No protein-ligand interaction detected (PLIP) MPD.5: 6 residues within 4Å: Chain B: V.3, N.4, I.5, V.43, Y.80, Y.85 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:I.5, B:V.43, B:Y.80 Hydrogen bonds: B:I.5 MPD.6: 5 residues within 4Å: Chain C: V.3, I.5, V.43, Y.80, Y.85 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:Y.80 Hydrogen bonds: C:Y.85 MPD.7: 4 residues within 4Å: Chain D: V.3, N.4, I.5, Y.80 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:Y.80 Hydrogen bonds: D:V.3, D:V.3, D:I.5 MPD.8: 8 residues within 4Å: Chain E: V.3, N.4, I.5, L.13, V.43, A.44, Y.80, Y.85 6 PLIP interactions: 6 interactions with chain E Hydrophobic interactions: E:L.13, E:V.43, E:A.44, E:Y.80 Hydrogen bonds: E:V.3, E:I.5 MPD.9: 6 residues within 4Å: Chain F: V.3, N.4, I.5, L.13, Y.80, Y.85 3 PLIP interactions: 3 interactions with chain F Hydrophobic interactions: F:N.4 Hydrogen bonds: F:I.5, F:Y.85 MPD.10: 7 residues within 4Å: Chain G: V.3, N.4, I.5, L.13, V.43, A.44, Y.85 6 PLIP interactions: 6 interactions with chain G Hydrophobic interactions: G:N.4, G:L.13, G:A.44, G:Y.85 Hydrogen bonds: G:I.5, G:I.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roberts, M.M. et al., Mycobacterium tuberculosis chaperonin 10 heptamers self-associate through their biologically active loops. J.BACTERIOL. (2003)

Release Date

2003-07-15

Peptides

10 kDa chaperonin: ABCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
I

C
J

D
K

E
L

F
M

G
N

10 kDa chaperonin

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