- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CD: CADMIUM ION(Non-covalent)
- 4 x H4P: 1-DEOXY-6-O-PHOSPHONO-1-[(PHOSPHONOMETHYL)AMINO]-L-THREO-HEXITOL(Non-covalent)
H4P.3: 14 residues within 4Å:- Chain A: C.11, K.46, N.48, R.49, S.50, P.101, A.102, K.124, R.154, H.185, Q.188, D.233
- Chain B: R.106
- Ligands: CD.1
22 PLIP interactions:20 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:K.46, A:N.48, A:S.50, A:S.50, A:A.102, A:K.124, A:R.154, A:Q.188, A:Q.188
- Water bridges: A:K.41, A:N.48, A:R.49, A:S.51, A:S.54, A:F.103, A:K.124, A:Q.127, A:G.191, A:D.233, B:R.106
- Salt bridges: A:R.49, B:R.106
H4P.4: 13 residues within 4Å:- Chain A: R.106
- Chain B: C.11, K.46, N.48, R.49, S.50, P.101, A.102, K.124, R.154, H.185, D.233
- Ligands: CD.2
17 PLIP interactions:15 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:K.46, B:K.46, B:N.48, B:S.50, B:A.102, B:K.124, B:R.154, A:R.106
- Water bridges: B:K.41, B:S.43, B:N.48, B:S.51, B:S.54, B:F.103, B:Q.127
- Salt bridges: B:R.49, A:R.106
H4P.7: 14 residues within 4Å:- Chain C: C.11, K.46, N.48, R.49, S.50, P.101, A.102, K.124, R.154, H.185, Q.188, D.233
- Chain D: R.106
- Ligands: CD.5
23 PLIP interactions:21 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:K.46, C:N.48, C:S.50, C:S.50, C:A.102, C:K.124, C:R.154, C:Q.188, C:Q.188
- Water bridges: C:K.41, C:N.48, C:R.49, C:S.51, C:S.54, C:D.81, C:F.103, C:K.124, C:Q.127, C:G.191, C:D.233, D:R.106
- Salt bridges: C:R.49, D:R.106
H4P.8: 13 residues within 4Å:- Chain C: R.106
- Chain D: C.11, K.46, N.48, R.49, S.50, P.101, A.102, K.124, R.154, H.185, D.233
- Ligands: CD.6
18 PLIP interactions:16 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:K.46, D:K.46, D:N.48, D:S.50, D:A.102, D:K.124, D:R.154, C:R.106
- Water bridges: D:K.41, D:S.43, D:N.48, D:S.51, D:S.54, D:D.81, D:F.103, D:Q.127
- Salt bridges: D:R.49, C:R.106
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xu, X. et al., Structure-Based Design of Novel Inhibitors of 3-Deoxy-D-manno-octulosonate 8-Phosphate Synthase. Drug DES.DISCOVERY (2003)
- Release Date
- 2004-02-17
- Peptides
- 2-dehydro-3-deoxyphosphooctonate aldolase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CD: CADMIUM ION(Non-covalent)
- 4 x H4P: 1-DEOXY-6-O-PHOSPHONO-1-[(PHOSPHONOMETHYL)AMINO]-L-THREO-HEXITOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xu, X. et al., Structure-Based Design of Novel Inhibitors of 3-Deoxy-D-manno-octulosonate 8-Phosphate Synthase. Drug DES.DISCOVERY (2003)
- Release Date
- 2004-02-17
- Peptides
- 2-dehydro-3-deoxyphosphooctonate aldolase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B