- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.68 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 4 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)(Non-covalent)
PLP.5: 16 residues within 4Å:- Chain A: S.88, G.89, M.90, I.93, Y.114, D.186, T.188, Y.189, S.208, T.210, K.211, A.221, L.341
- Chain C: Y.59, R.61
- Ligands: SO4.2
14 PLIP interactions:11 interactions with chain A, 3 interactions with chain C- Hydrophobic interactions: A:Y.114, A:Y.189
- Hydrogen bonds: A:S.88, A:G.89, A:M.90, A:Y.114, A:T.188, A:S.208, A:T.210, C:Y.59, C:Y.59
- Salt bridges: A:K.211, C:R.61
- pi-Stacking: A:Y.114
PLP.6: 15 residues within 4Å:- Chain B: S.88, G.89, M.90, Y.114, D.186, T.188, Y.189, S.208, T.210, K.211, A.221, L.341
- Chain D: Y.59, R.61
- Ligands: SO4.3
11 PLIP interactions:10 interactions with chain B, 1 interactions with chain D- Hydrophobic interactions: B:Y.114, B:Y.189
- Hydrogen bonds: B:S.88, B:G.89, B:M.90, B:S.208, B:S.208
- Water bridges: B:E.157
- Salt bridges: B:K.211, D:R.61
- pi-Stacking: B:Y.114
PLP.7: 16 residues within 4Å:- Chain A: Y.59, R.61
- Chain C: S.88, G.89, M.90, I.93, Y.114, D.186, T.188, Y.189, S.208, T.210, K.211, T.220, A.221, L.341
12 PLIP interactions:11 interactions with chain C, 1 interactions with chain A- Hydrophobic interactions: C:Y.114, C:Y.189, C:K.211
- Hydrogen bonds: C:S.88, C:G.89, C:M.90, C:S.208, C:S.208
- Water bridges: C:T.117
- Salt bridges: C:K.211, A:R.61
- pi-Stacking: C:Y.114
PLP.8: 16 residues within 4Å:- Chain B: Y.59, R.61
- Chain D: S.88, G.89, M.90, I.93, Y.114, D.186, T.188, Y.189, S.208, T.210, K.211, A.221, L.341
- Ligands: SO4.4
13 PLIP interactions:11 interactions with chain D, 2 interactions with chain B- Hydrophobic interactions: D:Y.114, D:Y.189
- Hydrogen bonds: D:S.88, D:G.89, D:M.90, D:T.188, D:S.208, D:S.208, D:T.210, B:Y.59
- Salt bridges: D:K.211, B:R.61
- pi-Stacking: D:Y.114
- 11 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.9: 5 residues within 4Å:- Chain A: S.4, K.6, P.8
- Chain D: D.385
- Ligands: PEG.10
No protein-ligand interaction detected (PLIP)PEG.10: 7 residues within 4Å:- Chain A: P.8, T.12, R.13, H.16, H.17
- Ligands: PEG.9, PEG.11
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.17
PEG.11: 5 residues within 4Å:- Chain A: H.16, H.17, G.18, Y.19
- Ligands: PEG.10
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:H.16, A:Y.19
PEG.12: 5 residues within 4Å:- Chain A: D.23, H.24, Y.33, H.57
- Chain B: G.25
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.23, A:H.57
PEG.13: 3 residues within 4Å:- Chain A: G.25
- Chain B: H.24, P.65
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.23
PEG.14: 9 residues within 4Å:- Chain B: G.18, Y.19, H.24, P.30, P.31, V.32, Y.33, P.65, T.66
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.18
- Water bridges: B:D.20
PEG.15: 7 residues within 4Å:- Chain A: A.295, S.296, F.297, P.298, Q.299, Y.300, T.301
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.300, A:T.301, A:T.301
- Water bridges: A:L.302
PEG.16: 11 residues within 4Å:- Chain A: G.110, N.111, T.112, L.113, V.135, D.136, M.137, F.156, E.157, A.160, H.165
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:G.110, A:N.111, A:V.135, A:M.137, A:E.157
- Water bridges: A:N.111
PEG.17: 8 residues within 4Å:- Chain B: A.11, N.263
- Chain C: R.268, N.272, L.380, E.381, D.382, I.383
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:R.268, C:N.272, C:L.380, C:I.383, B:N.263
PEG.18: 4 residues within 4Å:- Chain B: P.8, R.13, H.16, H.17
No protein-ligand interaction detected (PLIP)PEG.19: 6 residues within 4Å:- Chain B: H.16, D.20, P.21
- Chain C: Q.333, L.334, S.336
1 PLIP interactions:1 interactions with chain C- Water bridges: C:R.337
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- ?.
- Release Date
- 2004-06-08
- Peptides
- Methionine gamma-lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.68 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 4 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)(Non-covalent)
- 11 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- ?.
- Release Date
- 2004-06-08
- Peptides
- Methionine gamma-lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D