SMTL ID : 1pix.1 (1 other biounit)

Crystal structure of the carboxyltransferase subunit of the bacterial ion pump glutaconyl-coenzyme A decarboxylase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: Y.269, A.270, S.271, G.274 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.270, A:S.271, A:S.271, A:G.274 SO4.2: 5 residues within 4Å: Chain A: E.47, K.50, A.51, D.52, K.115 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.52, A:D.52 Water bridges: A:A.53 Salt bridges: A:K.115 SO4.6: 4 residues within 4Å: Chain A: R.165, R.173 Chain B: R.165, R.173 13 PLIP interactions: 6 interactions with chain B, 7 interactions with chain A Water bridges: B:R.165, B:R.165, B:R.173, B:D.470, A:R.165, A:R.165, A:R.173, A:N.469, A:N.469 Salt bridges: B:R.165, B:R.173, A:R.165, A:R.173 SO4.7: 4 residues within 4Å: Chain B: E.47, A.51, D.52, K.115 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.52, B:D.52 Water bridges: B:A.53 Salt bridges: B:K.115 SO4.8: 4 residues within 4Å: Chain B: Y.269, A.270, S.271, G.274 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.270, B:S.271, B:S.271, B:G.274

4 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 5 residues within 4Å: Chain A: T.138, H.444, I.445, P.446, D.470 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.138 FMT.4: 4 residues within 4Å: Chain A: R.8, Y.9, H.337, R.579 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.337 Water bridges: A:R.579 FMT.5: 5 residues within 4Å: Chain A: K.300, A.301, N.355, R.549, E.553 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.355, A:R.549, A:E.553 FMT.9: 5 residues within 4Å: Chain B: T.138, H.444, I.445, P.446, D.470 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wendt, K.S. et al., Crystal structure of the carboxyltransferase subunit of the bacterial sodium ion pump glutaconyl-coenzyme A decarboxylase. Embo J. (2003)

Release Date

2003-08-05

Peptides

Glutaconyl-CoA decarboxylase A subunit: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutaconyl-CoA decarboxylase A subunit

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