- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.61 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NA: SODIUM ION(Non-functional Binders)
- 4 x ACT: ACETATE ION(Non-functional Binders)
ACT.2: 7 residues within 4Å:- Chain A: F.54, R.252, Y.259, Y.272, W.361, Y.415
- Ligands: FAD.3
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:Y.259, A:W.361
- Hydrogen bonds: A:Y.272, A:Y.272
- Salt bridges: A:R.252
ACT.5: 7 residues within 4Å:- Chain B: F.54, R.252, Y.259, Y.272, W.361, Y.415
- Ligands: FAD.6
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:Y.259, B:W.361
- Hydrogen bonds: B:Y.272, B:Y.272
- Salt bridges: B:R.252
ACT.8: 7 residues within 4Å:- Chain C: F.54, R.252, Y.259, Y.272, W.361, Y.415
- Ligands: FAD.9
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:Y.259, C:W.361
- Hydrogen bonds: C:Y.272, C:Y.415
- Salt bridges: C:R.252
ACT.11: 7 residues within 4Å:- Chain D: F.54, R.252, Y.259, Y.272, W.361, Y.415
- Ligands: FAD.12
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:Y.259, D:W.361
- Hydrogen bonds: D:Y.272, D:Y.415
- Salt bridges: D:R.252
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)
FAD.3: 34 residues within 4Å:- Chain A: G.11, G.13, I.14, V.15, D.35, Q.36, P.42, G.44, S.45, T.46, H.48, A.49, P.50, G.51, L.52, T.172, T.173, V.174, C.202, A.203, G.204, W.206, I.210, H.225, Y.259, F.331, G.333, I.334, F.335, V.360, W.361, V.362, T.363
- Ligands: ACT.2
28 PLIP interactions:28 interactions with chain A- Hydrophobic interactions: A:F.331, A:F.335
- Hydrogen bonds: A:V.15, A:Q.36, A:G.44, A:S.45, A:T.46, A:T.46, A:G.51, A:L.52, A:L.52, A:V.174, A:V.174, A:G.204, A:Y.259, A:V.362, A:T.363
- Water bridges: A:G.13, A:G.13, A:Q.36, A:Q.36, A:G.43, A:G.43, A:G.44, A:F.205, A:F.205, A:V.360
- pi-Stacking: A:W.206
FAD.6: 34 residues within 4Å:- Chain B: G.11, G.13, I.14, V.15, D.35, Q.36, P.42, G.44, S.45, T.46, H.48, A.49, P.50, G.51, L.52, T.172, T.173, V.174, C.202, A.203, G.204, W.206, I.210, H.225, Y.259, F.331, G.333, I.334, F.335, V.360, W.361, V.362, T.363
- Ligands: ACT.5
28 PLIP interactions:28 interactions with chain B- Hydrophobic interactions: B:F.331, B:F.335
- Hydrogen bonds: B:V.15, B:Q.36, B:G.44, B:S.45, B:T.46, B:T.46, B:G.51, B:L.52, B:L.52, B:V.174, B:V.174, B:G.204, B:Y.259, B:V.362, B:T.363
- Water bridges: B:G.13, B:G.13, B:Q.36, B:Q.36, B:G.43, B:G.43, B:G.44, B:F.205, B:F.205, B:V.360
- pi-Stacking: B:W.206
FAD.9: 34 residues within 4Å:- Chain C: G.11, G.13, I.14, V.15, D.35, Q.36, P.42, G.44, S.45, T.46, H.48, A.49, P.50, G.51, L.52, T.172, T.173, V.174, C.202, A.203, G.204, W.206, I.210, H.225, Y.259, F.331, G.333, I.334, F.335, V.360, W.361, V.362, T.363
- Ligands: ACT.8
28 PLIP interactions:28 interactions with chain C- Hydrophobic interactions: C:F.331, C:F.335
- Hydrogen bonds: C:V.15, C:Q.36, C:G.44, C:S.45, C:T.46, C:T.46, C:G.51, C:L.52, C:L.52, C:V.174, C:V.174, C:G.204, C:V.362, C:T.363, C:T.363
- Water bridges: C:G.13, C:G.13, C:Q.36, C:Q.36, C:G.43, C:G.43, C:G.44, C:F.205, C:F.205, C:V.360
- pi-Stacking: C:W.206
FAD.12: 34 residues within 4Å:- Chain D: G.11, G.13, I.14, V.15, D.35, Q.36, P.42, G.44, S.45, T.46, H.48, A.49, P.50, G.51, L.52, T.172, T.173, V.174, C.202, A.203, G.204, W.206, I.210, H.225, Y.259, F.331, G.333, I.334, F.335, V.360, W.361, V.362, T.363
- Ligands: ACT.11
28 PLIP interactions:28 interactions with chain D- Hydrophobic interactions: D:F.331, D:F.335
- Hydrogen bonds: D:V.15, D:Q.36, D:G.44, D:S.45, D:T.46, D:T.46, D:G.51, D:L.52, D:L.52, D:V.174, D:V.174, D:G.204, D:V.362, D:T.363, D:T.363
- Water bridges: D:G.13, D:G.13, D:Q.36, D:Q.36, D:G.43, D:G.43, D:G.44, D:F.205, D:F.205, D:V.360
- pi-Stacking: D:W.206
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Leys, D. et al., Channelling and formation of 'active' formaldehyde in dimethylglycine oxidase. Embo J. (2003)
- Release Date
- 2003-10-07
- Peptides
- N,N-dimethylglycine oxidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.61 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NA: SODIUM ION(Non-functional Binders)
- 4 x ACT: ACETATE ION(Non-functional Binders)
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Leys, D. et al., Channelling and formation of 'active' formaldehyde in dimethylglycine oxidase. Embo J. (2003)
- Release Date
- 2003-10-07
- Peptides
- N,N-dimethylglycine oxidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A