- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NA: SODIUM ION(Non-functional Binders)
- 4 x FFO: N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid(Non-covalent)
FFO.2: 16 residues within 4Å:- Chain A: M.505, L.508, Y.539, D.552, T.554, G.566, A.567, N.568, Y.631, F.632, L.649, Y.651, E.658, Y.660, Y.699, F.719
18 PLIP interactions:18 interactions with chain A- Hydrophobic interactions: A:Y.539, A:Y.539, A:F.632, A:F.632, A:Y.699
- Hydrogen bonds: A:T.554, A:T.554, A:T.554, A:G.566
- Water bridges: A:Y.539, A:Y.539, A:D.552, A:G.566, A:N.568, A:Y.631, A:R.700
- Salt bridges: A:E.658
- pi-Stacking: A:Y.651
FFO.5: 16 residues within 4Å:- Chain B: M.505, L.508, Y.539, D.552, T.554, G.566, A.567, N.568, Y.631, F.632, L.649, Y.651, E.658, Y.660, Y.699, F.719
18 PLIP interactions:18 interactions with chain B- Hydrophobic interactions: B:Y.539, B:Y.539, B:F.632, B:F.632, B:Y.699
- Hydrogen bonds: B:T.554, B:T.554, B:T.554, B:G.566
- Water bridges: B:Y.539, B:Y.539, B:D.552, B:G.566, B:N.568, B:Y.631, B:R.700
- Salt bridges: B:E.658
- pi-Stacking: B:Y.651
FFO.8: 16 residues within 4Å:- Chain C: M.505, L.508, Y.539, D.552, T.554, G.566, A.567, N.568, Y.631, F.632, L.649, Y.651, E.658, Y.660, Y.699, F.719
18 PLIP interactions:18 interactions with chain C- Hydrophobic interactions: C:Y.539, C:Y.539, C:F.632, C:F.632, C:Y.699
- Hydrogen bonds: C:T.554, C:T.554, C:G.566, C:Y.660
- Water bridges: C:Y.539, C:Y.539, C:D.552, C:G.566, C:N.568, C:Y.631, C:R.700
- Salt bridges: C:E.658
- pi-Stacking: C:Y.651
FFO.11: 16 residues within 4Å:- Chain D: M.505, L.508, Y.539, D.552, T.554, G.566, A.567, N.568, Y.631, F.632, L.649, Y.651, E.658, Y.660, Y.699, F.719
18 PLIP interactions:18 interactions with chain D- Hydrophobic interactions: D:Y.539, D:Y.539, D:F.632, D:F.632, D:Y.699
- Hydrogen bonds: D:T.554, D:T.554, D:G.566, D:Y.660
- Water bridges: D:Y.539, D:Y.539, D:D.552, D:G.566, D:N.568, D:Y.631, D:R.700
- Salt bridges: D:E.658
- pi-Stacking: D:Y.651
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)
FAD.3: 33 residues within 4Å:- Chain A: G.11, G.13, I.14, V.15, L.34, D.35, Q.36, P.42, G.44, S.45, T.46, H.48, A.49, P.50, G.51, L.52, T.172, T.173, V.174, C.202, A.203, G.204, W.206, I.210, H.225, Y.259, G.333, I.334, F.335, V.360, W.361, V.362, T.363
27 PLIP interactions:27 interactions with chain A- Hydrophobic interactions: A:P.50, A:F.335
- Hydrogen bonds: A:G.13, A:V.15, A:Q.36, A:Q.36, A:G.44, A:S.45, A:T.46, A:T.46, A:G.51, A:L.52, A:L.52, A:V.174, A:V.174, A:G.204, A:Y.259, A:V.362, A:T.363
- Water bridges: A:G.16, A:Q.36, A:G.43, A:G.43, A:F.205, A:F.205, A:V.360
- pi-Stacking: A:W.206
FAD.6: 33 residues within 4Å:- Chain B: G.11, G.13, I.14, V.15, L.34, D.35, Q.36, P.42, G.44, S.45, T.46, H.48, A.49, P.50, G.51, L.52, T.172, T.173, V.174, C.202, A.203, G.204, W.206, I.210, H.225, Y.259, G.333, I.334, F.335, V.360, W.361, V.362, T.363
27 PLIP interactions:27 interactions with chain B- Hydrophobic interactions: B:P.50, B:F.335
- Hydrogen bonds: B:G.13, B:V.15, B:Q.36, B:Q.36, B:G.44, B:S.45, B:T.46, B:T.46, B:G.51, B:L.52, B:L.52, B:V.174, B:V.174, B:G.204, B:Y.259, B:V.362, B:T.363
- Water bridges: B:G.16, B:Q.36, B:G.43, B:G.43, B:F.205, B:F.205, B:V.360
- pi-Stacking: B:W.206
FAD.9: 33 residues within 4Å:- Chain C: G.11, G.13, I.14, V.15, L.34, D.35, Q.36, P.42, G.44, S.45, T.46, H.48, A.49, P.50, G.51, L.52, T.172, T.173, V.174, C.202, A.203, G.204, W.206, I.210, H.225, Y.259, G.333, I.334, F.335, V.360, W.361, V.362, T.363
27 PLIP interactions:27 interactions with chain C- Hydrophobic interactions: C:P.50, C:F.335
- Hydrogen bonds: C:G.13, C:V.15, C:Q.36, C:Q.36, C:G.44, C:S.45, C:T.46, C:T.46, C:G.51, C:L.52, C:L.52, C:V.174, C:V.174, C:G.204, C:V.362, C:T.363, C:T.363
- Water bridges: C:G.16, C:Q.36, C:G.43, C:G.43, C:F.205, C:F.205, C:V.360
- pi-Stacking: C:W.206
FAD.12: 33 residues within 4Å:- Chain D: G.11, G.13, I.14, V.15, L.34, D.35, Q.36, P.42, G.44, S.45, T.46, H.48, A.49, P.50, G.51, L.52, T.172, T.173, V.174, C.202, A.203, G.204, W.206, I.210, H.225, Y.259, G.333, I.334, F.335, V.360, W.361, V.362, T.363
27 PLIP interactions:27 interactions with chain D- Hydrophobic interactions: D:P.50, D:F.335
- Hydrogen bonds: D:G.13, D:V.15, D:Q.36, D:Q.36, D:G.44, D:S.45, D:T.46, D:T.46, D:G.51, D:L.52, D:L.52, D:V.174, D:V.174, D:G.204, D:V.362, D:T.363, D:T.363
- Water bridges: D:G.16, D:Q.36, D:G.43, D:G.43, D:F.205, D:F.205, D:V.360
- pi-Stacking: D:W.206
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Leys, D. et al., Channelling and formation of 'active' formaldehyde in dimethylglycine oxidase. Embo J. (2003)
- Release Date
- 2003-10-07
- Peptides
- N,N-dimethylglycine oxidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NA: SODIUM ION(Non-functional Binders)
- 4 x FFO: N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid(Non-covalent)
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Leys, D. et al., Channelling and formation of 'active' formaldehyde in dimethylglycine oxidase. Embo J. (2003)
- Release Date
- 2003-10-07
- Peptides
- N,N-dimethylglycine oxidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A