SMTL ID : 1pl9.1

Crystal structure of KDO8P synthase in its binary complex with substrate analog Z-FPEP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-tetramer

Ligands

4 x FPE: 3-FLUORO-2-(PHOSPHONOOXY)PROPANOIC ACID(Non-covalent)

FPE.1: 8 residues within 4Å: Chain A: N.26, K.55, Q.113, P.115, F.117, K.138, H.202, E.239 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.239 Salt bridges: A:K.55, A:K.138, A:K.138, A:H.202, A:H.202 FPE.2: 8 residues within 4Å: Chain B: N.26, K.55, Q.113, P.115, F.117, K.138, H.202, E.239 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.239 Salt bridges: B:K.55, B:K.138, B:K.138, B:H.202, B:H.202 FPE.3: 8 residues within 4Å: Chain C: N.26, K.55, Q.113, P.115, F.117, K.138, H.202, E.239 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:E.239 Salt bridges: C:K.55, C:K.138, C:K.138, C:H.202, C:H.202 FPE.4: 8 residues within 4Å: Chain D: N.26, K.55, Q.113, P.115, F.117, K.138, H.202, E.239 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:E.239 Salt bridges: D:K.55, D:K.138, D:K.138, D:H.202, D:H.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vainer, R. et al., Crystal structure of KDO8P synthase in its binary complex with substrate analog Z-FPEP. To be Published

Release Date

2004-07-13

Peptides

2-dehydro-3-deoxyphosphooctonate aldolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

2-dehydro-3-deoxyphosphooctonate aldolase

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