SMTL ID : 1pnv.1

Crystal Structure of TDP-epi-Vancosaminyltransferase GtfA in complexes with TDP and Vancomycin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

1 x MLU- OMZ- ASN- GHP- GHP- OMY- 3FG: VANCOMYCIN(Non-covalent)

MLU-OMZ-ASN-GHP-GHP-OMY-3FG.1: 22 residues within 4Å: Chain B: C.8, G.9, S.10, D.13, V.57, P.68, P.69, G.70, A.71, A.72, L.101, L.102, P.103, Y.141, G.144, A.145, L.148, F.149, Y.169, Y.173 Ligands: BGC-RER.2, BGC-RER.2 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:P.68, B:A.72, B:P.103, B:Y.141 Hydrogen bonds: B:S.10, B:S.10, B:S.10, B:D.13, B:G.70, B:G.70, B:G.70, B:L.101, B:L.102 Water bridges: B:S.10 Halogen bonds: B:Y.173

1 x BGC- RER: vancosamine-(1-2)-beta-D-glucopyranose(Non-covalent)

BGC-RER.2: 10 residues within 4Å: Chain B: D.127, H.128, L.129, Q.133, Y.141, Y.169, Y.173 Ligands: MLU-OMZ-ASN-GHP-GHP-OMY-3FG.1, MLU-OMZ-ASN-GHP-GHP-OMY-3FG.1, MLU-OMZ-ASN-GHP-GHP-OMY-3FG.1 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.133, B:Y.169 Water bridges: B:Q.133

1 x TYD: THYMIDINE-5'-DIPHOSPHATE(Non-covalent)

TYD.3: 17 residues within 4Å: Chain A: S.10, R.11, G.12, E.15, R.207, G.229, S.230, G.276, E.277, V.278, L.280, H.293, S.295, A.296, G.297, T.298, L.301 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.301 Hydrogen bonds: A:R.11, A:G.12, A:R.207, A:S.230, A:S.230, A:V.278, A:V.278, A:S.295, A:S.295, A:G.297, A:G.297, A:T.298 Water bridges: A:D.205 Salt bridges: A:H.293, A:H.293 pi-Cation interactions: A:R.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mulichak, A.M. et al., Structure of the Tdp-Epi-Vancosaminyltransferase Gtfa from the Chloroeremomycin Biosynthetic Pathway. Proc.Natl.Acad.Sci.USA (2003)

Release Date

2003-08-12

Peptides

GLYCOSYLTRANSFERASE GTFA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GLYCOSYLTRANSFERASE GTFA

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