- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x OXL: OXALATE ION(Non-covalent)
- 2 x ACO: ACETYL COENZYME *A(Covalent)(Non-covalent)
ACO.2: 22 residues within 4Å:- Chain A: V.37, Q.38, S.39, R.59, Y.80, L.93, N.94, T.95, K.96, N.117, F.118, H.119, A.122, I.145, K.158, A.159, Y.160, E.161, D.190, M.221
- Chain B: Q.294, Q.296
17 PLIP interactions:16 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:V.37, A:Q.38, A:K.158, A:Y.160
- Hydrogen bonds: A:S.39, A:S.39, A:L.93, A:T.95, A:N.117, A:N.117, A:H.119, A:A.159, B:Q.296
- Salt bridges: A:K.96, A:H.119, A:H.119, A:K.158
ACO.7: 24 residues within 4Å:- Chain A: G.269, G.270, Q.294
- Chain B: V.37, S.39, R.59, Y.80, L.93, N.94, T.95, K.96, N.117, F.118, H.119, A.122, I.145, K.146, G.147, K.158, A.159, Y.160, E.161, D.190, M.221
20 PLIP interactions:19 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:V.37, B:K.158, B:Y.160, B:Y.160
- Hydrogen bonds: B:S.39, B:L.93, B:T.95, B:N.117, B:N.117, B:H.119, B:A.159, B:A.159, B:E.161, A:Q.294
- Water bridges: B:R.59
- Salt bridges: B:K.96, B:H.119, B:H.119, B:K.158
- pi-Cation interactions: B:R.59
- 5 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 4 residues within 4Å:- Chain A: T.24, W.49, P.402, D.403
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:W.49, A:D.403
- Water bridges: A:A.48, A:N.87, A:K.405
GOL.4: 7 residues within 4Å:- Chain A: E.116, I.123, D.124, F.142, S.144, K.146, R.216
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.124, A:S.144, A:R.216
GOL.5: 6 residues within 4Å:- Chain A: R.71, D.72, I.73, P.74
- Chain B: L.242, Y.244
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:Y.244
- Water bridges: A:R.71
GOL.8: 4 residues within 4Å:- Chain A: F.176
- Chain B: F.176, G.179, P.180
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Water bridges: A:F.176
- Hydrogen bonds: B:D.178
GOL.9: 6 residues within 4Å:- Chain B: T.24, A.48, W.49, N.87, P.402, D.403
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.403, B:D.403
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gruez, A. et al., The crystal structure of the Escherichia coli yfdW gene product reveals a new fold of two interlaced rings identifying a wide family of CoA transferases. J.Biol.Chem. (2003)
- Release Date
- 2003-09-09
- Peptides
- Hypothetical protein yfdW: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x OXL: OXALATE ION(Non-covalent)
- 2 x ACO: ACETYL COENZYME *A(Covalent)(Non-covalent)
- 5 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gruez, A. et al., The crystal structure of the Escherichia coli yfdW gene product reveals a new fold of two interlaced rings identifying a wide family of CoA transferases. J.Biol.Chem. (2003)
- Release Date
- 2003-09-09
- Peptides
- Hypothetical protein yfdW: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B