SMTL ID : 1px8.1

Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x XYP: beta-D-xylopyranose(Non-covalent)

XYP.1: 12 residues within 4Å: Chain A: H.54, F.115, N.159, E.160, H.228, Y.230, E.277, Y.282, W.315, F.321, E.323, F.335 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.54, A:N.159, A:E.160, A:H.228, A:Y.230, A:E.323 XYP.2: 12 residues within 4Å: Chain B: H.54, F.115, N.159, E.160, H.228, Y.230, E.277, Y.282, W.315, F.321, E.323, F.335 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:H.54, B:N.159, B:E.160, B:H.228, B:Y.230, B:E.323 XYP.3: 12 residues within 4Å: Chain C: H.54, F.115, N.159, E.160, H.228, Y.230, E.277, Y.282, W.315, F.321, E.323, F.335 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:H.54, C:N.159, C:E.160, C:H.228, C:E.323 XYP.4: 12 residues within 4Å: Chain D: H.54, F.115, N.159, E.160, H.228, Y.230, E.277, Y.282, W.315, F.321, E.323, F.335 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:H.54, D:N.159, D:E.160, D:H.228, D:E.323 Water bridges: D:E.323

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, J.K. et al., Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase. J.Mol.Biol. (2004)

Release Date

2003-12-23

Peptides

Beta-xylosidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Beta-xylosidase

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