SMTL ID : 1q1y.1

Crystal Structures of Peptide Deformylase from Staphylococcus aureus Complexed with Actinonin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: Q.65, C.111, H.154, H.158 Ligands: BB2.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.154, A:H.158

1 x BB2: ACTINONIN(Non-covalent)

BB2.2: 18 residues within 4Å: Chain A: R.56, S.57, G.58, V.59, G.60, Q.65, L.105, E.109, G.110, C.111, L.112, I.150, V.151, H.154, E.155, H.158, E.185 Ligands: ZN.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:V.59, A:V.59, A:L.105, A:E.109, A:L.112, A:I.150, A:V.151, A:V.151, A:H.154 Hydrogen bonds: A:V.59, A:G.60, A:Q.65, A:G.110, A:L.112, A:E.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoon, H.J. et al., Crystal structure of peptide deformylase from Staphylococcus aureus in complex with actinonin, a naturally occurring antibacterial agent. Proteins (2004)

Release Date

2004-07-23

Peptides

Peptide deformylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptide deformylase

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