SMTL ID : 1q3u.1

Crystal structure of a wild-type Cre recombinase-loxP synapse: pre-cleavage complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-tetramer

Ligands

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 1 residues within 4Å: Chain F: A.264 Ligand excluded by PLIP IOD.11: 1 residues within 4Å: Chain H: A.264 Ligand excluded by PLIP

10 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.2: 1 residues within 4Å: Chain A: G.18 No protein-ligand interaction detected (PLIP) MG.3: 4 residues within 4Å: Chain A: T.26 Chain B: T.12 Chain E: H.44, K.47 No protein-ligand interaction detected (PLIP) MG.4: 1 residues within 4Å: Chain B: A.6 No protein-ligand interaction detected (PLIP) MG.5: 2 residues within 4Å: Chain C: T.17, G.18 No protein-ligand interaction detected (PLIP) MG.6: 1 residues within 4Å: Chain D: C.21 No protein-ligand interaction detected (PLIP) MG.7: 1 residues within 4Å: Chain E: H.273 No protein-ligand interaction detected (PLIP) MG.8: 1 residues within 4Å: Chain E: D.145 No protein-ligand interaction detected (PLIP) MG.9: 3 residues within 4Å: Chain B: C.7 Chain E: R.163, N.164 No protein-ligand interaction detected (PLIP) MG.10: 1 residues within 4Å: Chain E: D.161 No protein-ligand interaction detected (PLIP) MG.12: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ennifar, E. et al., Crystal structure of a wild-type Cre recombinase-loxP synapse reveals a novel spacer conformation suggesting an alternative mechanism for DNA cleavage activation. Nucleic Acids Res. (2003)

Release Date

2003-09-16

Peptides

Cre recombinase: EFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

E
A

F
B

G
E

H
F

Cre recombinase

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