SMTL ID : 1q3v.1

Crystal structure of a wild-type Cre recombinase-loxP synapse: phosphotyrosine covalent intermediate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.91 Å

Oligo State

homo-tetramer

Ligands

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: C.7 Chain H: A.264 Ligand excluded by PLIP IOD.8: 1 residues within 4Å: Chain J: A.264 Ligand excluded by PLIP

7 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.2: 1 residues within 4Å: Chain C: A.6 No protein-ligand interaction detected (PLIP) MG.3: 3 residues within 4Å: Chain B: T.10 Chain G: H.44, K.47 No protein-ligand interaction detected (PLIP) MG.4: 1 residues within 4Å: Chain G: H.273 No protein-ligand interaction detected (PLIP) MG.5: 2 residues within 4Å: Chain G: E.142, D.145 No protein-ligand interaction detected (PLIP) MG.6: 3 residues within 4Å: Chain G: M.153, D.161, N.164 No protein-ligand interaction detected (PLIP) MG.7: 2 residues within 4Å: Chain G: S.334, E.335 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:E.335 MG.9: 1 residues within 4Å: Chain F: C.21 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ennifar, E. et al., Crystal structure of a wild-type Cre recombinase-loxP synapse reveals a novel spacer conformation suggesting an alternative mechanism for DNA cleavage activation. Nucleic Acids Res. (2003)

Release Date

2003-09-16

Peptides

Cre recombinase: GHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

G
A

H
B

I
E

J
F

Cre recombinase

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