SMTL ID : 1q4t.1

crystal structure of 4-hydroxybenzoyl CoA thioesterase from Arthrobacter sp. strain SU complexed with 4-hydroxyphenyl CoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-tetramer

Ligands

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: R.115, I.116, H.117 Ligand excluded by PLIP CL.2: 7 residues within 4Å: Chain A: A.10, T.11, G.12, G.13, N.14, L.15, Y.26 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain B: R.115, I.116, H.117 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain B: G.12, G.13, N.14, L.15, Y.26 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain C: R.115, I.116, H.117 Ligand excluded by PLIP CL.11: 7 residues within 4Å: Chain C: A.10, T.11, G.12, G.13, N.14, L.15, Y.26 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain D: R.115, I.116, H.117 Ligand excluded by PLIP CL.15: 5 residues within 4Å: Chain D: G.12, G.13, N.14, L.15, Y.26 Ligand excluded by PLIP

4 x 4CO: 4-HYDROXYPHENACYL COENZYME A(Non-covalent)

4CO.3: 27 residues within 4Å: Chain A: L.15, D.31, E.73, M.74, T.77, E.78, M.90, V.92, G.93, Q.94, A.145, R.147, P.148, R.150 Chain B: Q.58, V.63, H.64, G.65, F.100, F.101, R.102, P.103 Chain C: H.117, G.119, S.120, T.121, T.122 32 PLIP interactions: 4 interactions with chain C, 10 interactions with chain B, 18 interactions with chain A Hydrogen bonds: C:S.120, C:T.121, C:T.122, B:G.65, B:F.100, A:E.73, A:E.78, A:G.93, A:G.93, A:P.148, A:R.150 Salt bridges: C:H.117, B:R.102, A:R.150 Hydrophobic interactions: B:Q.58, B:Q.58, B:F.100, A:M.74, A:T.77, A:E.78, A:Q.94, A:A.145 Water bridges: B:R.59, B:R.102, B:R.102, A:D.31, A:R.150, A:R.150, A:R.150 pi-Stacking: B:H.64 pi-Cation interactions: A:R.150, A:R.150 4CO.7: 27 residues within 4Å: Chain A: Q.58, V.63, H.64, G.65, F.100, F.101, R.102, P.103 Chain B: L.15, D.31, E.73, M.74, T.77, E.78, M.90, V.92, G.93, Q.94, A.145, R.147, P.148, R.150 Chain D: H.117, G.119, S.120, T.121, T.122 34 PLIP interactions: 14 interactions with chain B, 12 interactions with chain A, 8 interactions with chain D Hydrophobic interactions: B:M.74, B:T.77, B:E.78, B:V.92, B:Q.94, B:A.145, A:Q.58, A:Q.58, A:F.100 Hydrogen bonds: B:G.93, B:G.93, B:P.148, B:R.150, A:G.65, A:F.100, D:S.120, D:T.121, D:T.122, D:T.122 Water bridges: B:D.31, A:R.59, A:F.100, A:R.102, A:R.102, A:R.102, D:H.117, D:S.120, D:S.120 Salt bridges: B:R.150, A:R.102, D:H.117 pi-Cation interactions: B:R.150, B:R.150 pi-Stacking: A:H.64 4CO.12: 27 residues within 4Å: Chain A: H.117, G.119, S.120, T.121, T.122 Chain C: L.15, D.31, E.73, M.74, T.77, E.78, M.90, V.92, G.93, Q.94, A.145, R.147, P.148, R.150 Chain D: Q.58, V.63, H.64, G.65, F.100, F.101, R.102, P.103 32 PLIP interactions: 16 interactions with chain C, 6 interactions with chain A, 10 interactions with chain D Hydrophobic interactions: C:M.74, C:T.77, C:E.78, C:Q.94, C:A.145, D:Q.58, D:Q.58, D:F.100 Hydrogen bonds: C:G.93, C:G.93, C:P.148, C:R.150, A:S.120, A:T.121, A:T.121, A:T.122, A:T.122, D:G.65, D:F.100 Water bridges: C:D.31, C:R.150, C:R.150, C:R.150, D:R.59, D:R.102, D:R.102 Salt bridges: C:R.150, A:H.117, D:R.102 pi-Cation interactions: C:R.150, C:R.150 pi-Stacking: D:H.64 4CO.16: 27 residues within 4Å: Chain B: H.117, G.119, S.120, T.121, T.122 Chain C: Q.58, V.63, H.64, G.65, F.100, F.101, R.102, P.103 Chain D: L.15, D.31, E.73, M.74, T.77, E.78, M.90, V.92, G.93, Q.94, A.145, R.147, P.148, R.150 37 PLIP interactions: 18 interactions with chain D, 12 interactions with chain C, 7 interactions with chain B Hydrophobic interactions: D:M.74, D:T.77, D:E.78, D:V.92, D:Q.94, D:A.145, C:Q.58, C:Q.58, C:F.100 Hydrogen bonds: D:E.73, D:E.78, D:G.93, D:G.93, D:P.148, C:G.65, C:F.100, B:S.120, B:T.121, B:T.122 Water bridges: D:D.31, D:R.150, D:R.150, D:R.150, C:R.59, C:F.100, C:R.102, C:R.102, C:R.102, B:H.117, B:T.121, B:T.121 Salt bridges: D:R.150, C:R.102, B:H.117 pi-Cation interactions: D:R.150, D:R.150 pi-Stacking: C:H.64

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: V.81, M.89, M.90, A.91 Chain B: W.60 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.89, A:A.91 EDO.8: 4 residues within 4Å: Chain B: D.17, V.18, A.19, S.20 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.17 Water bridges: B:S.20 EDO.9: 4 residues within 4Å: Chain A: W.60 Chain B: V.81, M.90, A.91 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.91 EDO.13: 5 residues within 4Å: Chain C: V.81, M.89, M.90, A.91 Chain D: W.60 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:M.89, C:A.91 EDO.17: 4 residues within 4Å: Chain D: D.17, V.18, A.19, S.20 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:D.17 Water bridges: D:S.20 EDO.18: 4 residues within 4Å: Chain C: W.60 Chain D: V.81, M.90, A.91 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:A.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thoden, J.B. et al., The Structure of 4-Hydroxybenzoyl-CoA Thioesterase from Arthrobacter sp. strain SU. J.Biol.Chem. (2003)

Release Date

2003-09-23

Peptides

Thioesterase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Thioesterase

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