- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.99 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x COA: COENZYME A(Non-covalent)
- 14 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.2: 9 residues within 4Å:- Chain A: W.262, E.263, T.264, D.265, P.266, Y.269
- Chain B: W.158, G.160, R.243
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:W.262
- Hydrogen bonds: A:Y.269
MPD.3: 3 residues within 4Å:- Chain A: A.285, I.286, Y.317
No protein-ligand interaction detected (PLIP)MPD.4: 4 residues within 4Å:- Chain A: P.134
- Chain B: V.327, A.328, T.331
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:P.134
MPD.5: 8 residues within 4Å:- Chain A: T.5, A.29, W.30, G.32, N.68, P.383, D.384, K.386
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:D.384
- Hydrogen bonds: A:W.30
MPD.6: 5 residues within 4Å:- Chain A: Q.218, D.221
- Chain B: K.368, Y.369, L.370
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:K.368, B:L.370, A:Q.218
MPD.7: 5 residues within 4Å:- Chain A: W.158, P.230, Q.231, N.234, G.235
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:W.158, A:Q.231
- Water bridges: A:P.230, A:N.234, A:G.235
MPD.8: 7 residues within 4Å:- Chain A: P.41, E.73, L.74, T.395, M.412, K.413, H.416
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:E.73, A:T.395, A:H.416
- Water bridges: A:E.73, A:N.75
MPD.10: 9 residues within 4Å:- Chain A: W.158, G.160, R.243
- Chain B: W.262, E.263, T.264, D.265, P.266, Y.269
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:W.262
- Hydrogen bonds: B:Y.269, B:Y.269
MPD.11: 3 residues within 4Å:- Chain B: A.285, I.286, Y.317
No protein-ligand interaction detected (PLIP)MPD.12: 4 residues within 4Å:- Chain A: V.327, A.328, T.331
- Chain B: P.134
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:P.134
MPD.13: 8 residues within 4Å:- Chain B: T.5, A.29, W.30, G.32, N.68, P.383, D.384, K.386
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:D.384
- Hydrogen bonds: B:W.30
MPD.14: 5 residues within 4Å:- Chain A: K.368, Y.369, L.370
- Chain B: Q.218, D.221
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:Q.218, A:K.368, A:L.370
- Hydrogen bonds: B:D.221
MPD.15: 5 residues within 4Å:- Chain B: W.158, P.230, Q.231, N.234, G.235
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:W.158, B:Q.231
- Water bridges: B:P.230, B:N.234, B:G.235
MPD.16: 7 residues within 4Å:- Chain B: P.41, E.73, L.74, T.395, M.412, K.413, H.416
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:E.73, B:T.395, B:H.416
- Water bridges: B:E.73, B:E.73, B:N.75
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gogos, A. et al., Structure of Escherichia coli YfdW, a type III CoA transferase. Acta Crystallogr.,Sect.D (2004)
- Release Date
- 2003-09-30
- Peptides
- Hypothetical protein yfdW: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.99 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x COA: COENZYME A(Non-covalent)
- 14 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gogos, A. et al., Structure of Escherichia coli YfdW, a type III CoA transferase. Acta Crystallogr.,Sect.D (2004)
- Release Date
- 2003-09-30
- Peptides
- Hypothetical protein yfdW: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A