SMTL ID : 1qdn.1 (1 other biounit)

AMINO TERMINAL DOMAIN OF THE N-ETHYLMALEIMIDE SENSITIVE FUSION PROTEIN (NSF)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-trimer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.11, C.12, F.63, R.68 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:C.12 Water bridges: A:L.65, A:L.65 Salt bridges: A:R.11, A:R.68 SO4.2: 6 residues within 4Å: Chain A: T.14, H.53 Chain B: T.14, H.53 Chain C: T.14, H.53 8 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C, 4 interactions with chain A Water bridges: B:S.55, C:T.14, A:T.14, A:S.55, A:S.55 Salt bridges: B:H.53, C:H.53, A:H.53 SO4.3: 2 residues within 4Å: Chain A: S.74, I.75 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.75 SO4.6: 4 residues within 4Å: Chain B: R.11, C.12, F.63, R.68 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:C.12 Water bridges: B:L.65, B:L.65 Salt bridges: B:R.11, B:R.68 SO4.7: 2 residues within 4Å: Chain B: R.11, R.68 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.11, B:R.68 SO4.8: 2 residues within 4Å: Chain B: R.39, P.42 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.39 SO4.11: 4 residues within 4Å: Chain C: R.11, C.12, F.63, R.68 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:C.12 Water bridges: C:L.65, C:L.65 Salt bridges: C:R.11, C:R.68 SO4.12: 2 residues within 4Å: Chain C: S.74, I.75 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:I.75 Water bridges: C:R.11, C:R.68, C:R.68

6 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.4: 11 residues within 4Å: Chain A: C.12, P.13, L.17, S.18, S.20, C.22, V.24, A.62, F.63, S.64, Q.67 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.20 Water bridges: A:N.21 BME.5: 7 residues within 4Å: Chain A: F.86, D.87, K.88, Q.91, C.92, L.177, V.179 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.86 BME.9: 11 residues within 4Å: Chain B: C.12, P.13, L.17, S.18, S.20, C.22, V.24, A.62, F.63, S.64, Q.67 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.20 Water bridges: B:N.21 BME.10: 7 residues within 4Å: Chain B: F.86, D.87, K.88, Q.91, C.92, L.177, V.179 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:F.86 BME.13: 11 residues within 4Å: Chain C: C.12, P.13, L.17, S.18, S.20, C.22, V.24, A.62, F.63, S.64, Q.67 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.20 Water bridges: C:N.21 BME.14: 7 residues within 4Å: Chain C: F.86, D.87, K.88, Q.91, C.92, L.177, V.179 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:F.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

May, A.P. et al., Crystal structure of the amino-terminal domain of N-ethylmaleimide-sensitive fusion protein. Nat.Cell Biol. (1999)

Release Date

1999-06-21

Peptides

PROTEIN (N-ETHYLMALEIMIDE SENSITIVE FUSION PROTEIN (NSF)): ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

PROTEIN (N-ETHYLMALEIMIDE SENSITIVE FUSION PROTEIN (NSF))

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