SMTL ID : 1qdn.2 (1 other biounit)

AMINO TERMINAL DOMAIN OF THE N-ETHYLMALEIMIDE SENSITIVE FUSION PROTEIN (NSF)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-hexamer

Ligands

16 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.11, C.12, F.63, R.68 Ligand excluded by PLIP SO4.2: 6 residues within 4Å: Chain A: T.14, H.53 Chain B: T.14, H.53 Chain C: T.14, H.53 Ligand excluded by PLIP SO4.3: 2 residues within 4Å: Chain A: S.74, I.75 Ligand excluded by PLIP SO4.6: 4 residues within 4Å: Chain B: R.11, C.12, F.63, R.68 Ligand excluded by PLIP SO4.7: 2 residues within 4Å: Chain B: R.11, R.68 Ligand excluded by PLIP SO4.8: 2 residues within 4Å: Chain B: R.39, P.42 Ligand excluded by PLIP SO4.11: 4 residues within 4Å: Chain C: R.11, C.12, F.63, R.68 Ligand excluded by PLIP SO4.12: 2 residues within 4Å: Chain C: S.74, I.75 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain D: R.11, C.12, F.63, R.68 Ligand excluded by PLIP SO4.16: 6 residues within 4Å: Chain D: T.14, H.53 Chain E: T.14, H.53 Chain F: T.14, H.53 Ligand excluded by PLIP SO4.17: 2 residues within 4Å: Chain D: S.74, I.75 Ligand excluded by PLIP SO4.20: 4 residues within 4Å: Chain E: R.11, C.12, F.63, R.68 Ligand excluded by PLIP SO4.21: 2 residues within 4Å: Chain E: R.11, R.68 Ligand excluded by PLIP SO4.22: 2 residues within 4Å: Chain E: R.39, P.42 Ligand excluded by PLIP SO4.25: 4 residues within 4Å: Chain F: R.11, C.12, F.63, R.68 Ligand excluded by PLIP SO4.26: 2 residues within 4Å: Chain F: S.74, I.75 Ligand excluded by PLIP

12 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.4: 11 residues within 4Å: Chain A: C.12, P.13, L.17, S.18, S.20, C.22, V.24, A.62, F.63, S.64, Q.67 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.20 Water bridges: A:N.21 BME.5: 8 residues within 4Å: Chain A: F.86, D.87, K.88, Q.91, C.92, L.177, V.179 Chain E: G.180 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain E Hydrogen bonds: A:F.86 Water bridges: E:G.180 BME.9: 11 residues within 4Å: Chain B: C.12, P.13, L.17, S.18, S.20, C.22, V.24, A.62, F.63, S.64, Q.67 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.20 Water bridges: B:N.21 BME.10: 8 residues within 4Å: Chain B: F.86, D.87, K.88, Q.91, C.92, L.177, V.179 Chain D: G.180 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:F.86 BME.13: 11 residues within 4Å: Chain C: C.12, P.13, L.17, S.18, S.20, C.22, V.24, A.62, F.63, S.64, Q.67 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.20 Water bridges: C:N.21 BME.14: 8 residues within 4Å: Chain C: F.86, D.87, K.88, Q.91, C.92, L.177, V.179 Chain F: G.180 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain C Water bridges: F:G.180 Hydrogen bonds: C:F.86 BME.18: 11 residues within 4Å: Chain D: C.12, P.13, L.17, S.18, S.20, C.22, V.24, A.62, F.63, S.64, Q.67 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.20 Water bridges: D:N.21 BME.19: 8 residues within 4Å: Chain B: G.180 Chain D: F.86, D.87, K.88, Q.91, C.92, L.177, V.179 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:F.86 Water bridges: B:G.180 BME.23: 11 residues within 4Å: Chain E: C.12, P.13, L.17, S.18, S.20, C.22, V.24, A.62, F.63, S.64, Q.67 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:S.20 Water bridges: E:N.21 BME.24: 8 residues within 4Å: Chain A: G.180 Chain E: F.86, D.87, K.88, Q.91, C.92, L.177, V.179 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:F.86 BME.27: 11 residues within 4Å: Chain F: C.12, P.13, L.17, S.18, S.20, C.22, V.24, A.62, F.63, S.64, Q.67 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:S.20 Water bridges: F:N.21 BME.28: 8 residues within 4Å: Chain C: G.180 Chain F: F.86, D.87, K.88, Q.91, C.92, L.177, V.179 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain C Hydrogen bonds: F:F.86 Water bridges: C:G.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

May, A.P. et al., Crystal structure of the amino-terminal domain of N-ethylmaleimide-sensitive fusion protein. Nat.Cell Biol. (1999)

Release Date

1999-06-21

Peptides

PROTEIN (N-ETHYLMALEIMIDE SENSITIVE FUSION PROTEIN (NSF)): ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

PROTEIN (N-ETHYLMALEIMIDE SENSITIVE FUSION PROTEIN (NSF))

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