SMTL ID : 1qhy.1

CHLORAMPHENICOL PHOSPHOTRANSFERASE FROM STREPTOMYCES VENEZUELAE IN COMPLEX WITH ATPGAMMAS AND CHLORAMPHENICOL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: A.50, E.51 Ligands: CLM.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.51 SO4.6: 3 residues within 4Å: Chain B: A.50, E.51 Ligands: CLM.10 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.51, B:E.51 SO4.11: 3 residues within 4Å: Chain C: A.50, E.51 Ligands: CLM.15 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.51 SO4.16: 3 residues within 4Å: Chain D: A.50, E.51 Ligands: CLM.20 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:E.51, D:E.51

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: S.17, D.92 Ligands: AGS.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.17, A:D.92 MG.7: 3 residues within 4Å: Chain B: S.17, D.92 Ligands: AGS.8 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:S.17, B:D.92 MG.12: 3 residues within 4Å: Chain C: S.17, D.92 Ligands: AGS.13 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:S.17, C:D.92 MG.17: 3 residues within 4Å: Chain D: S.17, D.92 Ligands: AGS.18 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:S.17, D:D.92

4 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.3: 19 residues within 4Å: Chain A: G.11, S.12, S.13, A.14, G.15, K.16, S.17, G.18, D.37, R.129, R.133, R.136, T.160, K.163, E.164, S.165 Ligands: MG.2, CLM.4, AGS.18 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:G.11, A:S.13, A:A.14, A:G.15, A:K.16, A:K.16, A:S.17, A:G.18, A:D.37, A:R.129, A:R.129, A:K.163 Water bridges: A:S.17, A:R.133, A:S.165 Salt bridges: A:K.16, A:R.133, A:R.133 pi-Cation interactions: A:R.129 AGS.8: 19 residues within 4Å: Chain B: G.11, S.12, S.13, A.14, G.15, K.16, S.17, G.18, D.37, R.129, R.133, R.136, T.160, K.163, E.164, S.165 Ligands: MG.7, CLM.9, AGS.13 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:S.12, B:S.13, B:A.14, B:G.15, B:K.16, B:K.16, B:S.17, B:G.18, B:R.129, B:R.129, B:K.163 Water bridges: B:S.17, B:R.133, B:S.165 Salt bridges: B:K.16, B:R.133, B:R.133 pi-Cation interactions: B:R.129 AGS.13: 19 residues within 4Å: Chain C: G.11, S.12, S.13, A.14, G.15, K.16, S.17, G.18, D.37, R.129, R.133, R.136, T.160, K.163, E.164, S.165 Ligands: AGS.8, MG.12, CLM.14 19 PLIP interactions: 19 interactions with chain C Hydrogen bonds: C:S.13, C:A.14, C:G.15, C:K.16, C:K.16, C:K.16, C:S.17, C:G.18, C:D.37, C:R.129, C:R.129, C:K.163 Water bridges: C:S.17, C:R.133, C:S.165 Salt bridges: C:K.16, C:R.133, C:R.133 pi-Cation interactions: C:R.129 AGS.18: 19 residues within 4Å: Chain D: G.11, S.12, S.13, A.14, G.15, K.16, S.17, G.18, D.37, R.129, R.133, R.136, T.160, K.163, E.164, S.165 Ligands: AGS.3, MG.17, CLM.19 18 PLIP interactions: 18 interactions with chain D Hydrogen bonds: D:S.13, D:A.14, D:G.15, D:K.16, D:K.16, D:K.16, D:S.17, D:G.18, D:R.129, D:R.129, D:K.163 Water bridges: D:S.17, D:S.17, D:S.165 Salt bridges: D:K.16, D:R.133, D:R.133 pi-Cation interactions: D:R.129

8 x CLM: CHLORAMPHENICOL(Non-covalent)

CLM.4: 14 residues within 4Å: Chain A: S.12, V.36, D.37, I.40, I.54, F.56, I.64, D.93, V.94, L.96, R.136, M.140, Q.144 Ligands: AGS.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.36, A:I.40, A:I.54, A:F.56, A:V.94, A:L.96 Hydrogen bonds: A:D.37, A:R.136, A:Q.144 CLM.5: 9 residues within 4Å: Chain A: P.44, K.46, M.47, A.50, E.51, E.67 Chain C: P.28, P.30 Ligands: SO4.1 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:A.50, C:P.30 Halogen bonds: A:K.46 CLM.9: 14 residues within 4Å: Chain B: S.12, V.36, D.37, I.40, I.54, F.56, I.64, D.93, V.94, L.96, R.136, M.140, Q.144 Ligands: AGS.8 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:V.36, B:I.40, B:I.54, B:F.56, B:V.94, B:L.96 Hydrogen bonds: B:D.37, B:R.136, B:Q.144 CLM.10: 9 residues within 4Å: Chain B: P.44, K.46, M.47, A.50, E.51, E.67 Chain D: P.28, P.30 Ligands: SO4.6 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain D Hydrophobic interactions: B:A.50, D:P.30 Hydrogen bonds: B:E.67 Halogen bonds: B:K.46 CLM.14: 14 residues within 4Å: Chain C: S.12, V.36, D.37, I.40, I.54, F.56, I.64, D.93, V.94, L.96, R.136, M.140, Q.144 Ligands: AGS.13 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:V.36, C:I.40, C:I.54, C:F.56, C:V.94, C:L.96 Hydrogen bonds: C:D.37, C:R.136, C:Q.144 CLM.15: 9 residues within 4Å: Chain A: P.28, P.30 Chain C: P.44, K.46, M.47, A.50, E.51, E.67 Ligands: SO4.11 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:A.50, A:P.30 Halogen bonds: C:K.46 CLM.19: 14 residues within 4Å: Chain D: S.12, V.36, D.37, I.40, I.54, F.56, I.64, D.93, V.94, L.96, R.136, M.140, Q.144 Ligands: AGS.18 9 PLIP interactions: 9 interactions with chain D Hydrophobic interactions: D:V.36, D:I.40, D:I.54, D:F.56, D:V.94, D:L.96 Hydrogen bonds: D:D.37, D:R.136, D:Q.144 CLM.20: 9 residues within 4Å: Chain B: P.28, P.30 Chain D: P.44, K.46, M.47, A.50, E.51, E.67 Ligands: SO4.16 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain B Hydrophobic interactions: D:A.50, B:P.30 Hydrogen bonds: D:E.67 Halogen bonds: D:K.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Izard, T. et al., The Crystal Structures of Chloramphenicol Phosphotransferase Reveal a Novel Inactivation Mechanism. Embo J. (2000)

Release Date

2000-06-07

Peptides

CHLORAMPHENICOL PHOSPHOTRANSFERASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

CHLORAMPHENICOL PHOSPHOTRANSFERASE

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