SMTL ID : 1qi6.1

SECOND APO FORM OF AN NADP DEPENDENT ALDEHYDE DEHYDROGENASE WITH GLU250 SITUATED 3.7 A FROM CYS284

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: N.154, Y.155, L.159, E.250, R.283, C.284, T.285, R.437 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.154, A:C.284, A:T.285 Salt bridges: A:R.283, A:R.437 SO4.2: 4 residues within 4Å: Chain A: T.180, G.208, R.209, G.210 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.180, A:G.210 SO4.3: 6 residues within 4Å: Chain A: R.103, R.283, T.285, Q.436, R.437, G.438 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.285, A:R.437, A:G.438 Salt bridges: A:R.103, A:R.283, A:R.437 SO4.4: 8 residues within 4Å: Chain B: N.154, Y.155, L.159, E.250, R.283, C.284, T.285, R.437 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.154, B:C.284, B:T.285 Salt bridges: B:R.283, B:R.437 SO4.5: 4 residues within 4Å: Chain B: T.180, G.208, R.209, G.210 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.180, B:G.210 SO4.6: 6 residues within 4Å: Chain B: R.103, R.283, T.285, Q.436, R.437, G.438 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.437 Salt bridges: B:R.103, B:R.283, B:R.437 SO4.7: 8 residues within 4Å: Chain C: N.154, Y.155, L.159, E.250, R.283, C.284, T.285, R.437 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:N.154, C:C.284, C:T.285, C:T.285 Salt bridges: C:R.283, C:R.437 SO4.8: 4 residues within 4Å: Chain C: T.180, G.208, R.209, G.210 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:T.180, C:G.210 Water bridges: C:T.180, C:S.211 SO4.9: 6 residues within 4Å: Chain C: R.103, R.283, T.285, Q.436, R.437, G.438 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:T.285, C:R.437 Salt bridges: C:R.103, C:R.283, C:R.437 SO4.10: 4 residues within 4Å: Chain D: T.180, G.208, R.209, G.210 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:T.180, D:G.210 SO4.11: 6 residues within 4Å: Chain D: R.103, R.283, T.285, Q.436, R.437, G.438 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:T.285, D:R.437 Salt bridges: D:R.103, D:R.283, D:R.437 SO4.12: 7 residues within 4Å: Chain D: N.154, Y.155, E.250, R.283, C.284, T.285, R.437 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:N.154, D:C.284, D:T.285, D:T.285 Salt bridges: D:R.283, D:R.437

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cobessi, D. et al., Structural and biochemical investigations of the catalytic mechanism of an NADP-dependent aldehyde dehydrogenase from Streptococcus mutans. J.Mol.Biol. (2000)

Release Date

2001-01-10

Peptides

PROTEIN (NADP DEPENDENT NONPHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE): ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

PROTEIN (NADP DEPENDENT NONPHOSPHORYLATING GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE)

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