SMTL ID : 1qip.1 (1 other biounit)

HUMAN GLYOXALASE I COMPLEXED WITH S-P-NITROBENZYLOXYCARBONYLGLUTATHIONE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: Q.33, E.99 Chain B: H.126, E.172 5 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:E.99, B:H.126, B:E.172, H2O.9, H2O.18 ZN.4: 4 residues within 4Å: Chain A: H.126, E.172 Chain B: Q.33, E.99 5 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:H.126, A:E.172, B:E.99, H2O.9, H2O.9

2 x GNB: S-P-NITROBENZYLOXYCARBONYLGLUTATHIONE(Non-covalent)

GNB.2: 20 residues within 4Å: Chain A: M.35, R.37, Q.58, C.60, F.62, F.67, L.69, F.71, I.88, L.92, T.101, N.103 Chain B: R.122, K.150, M.157, L.160, F.162, W.170, M.179 Ligands: BME.3 13 PLIP interactions: 12 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.67, A:F.67, A:F.71, A:I.88, A:L.92, A:T.101 Hydrogen bonds: A:N.103, A:N.103 Water bridges: A:R.37, A:M.65, A:N.103 Salt bridges: A:R.37, B:R.122 GNB.5: 19 residues within 4Å: Chain A: R.122, M.157, L.160, F.162, W.170, E.172, M.179, L.182 Chain B: M.35, R.37, Q.58, C.60, F.62, F.67, I.88, L.92, T.101, N.103 Ligands: BME.6 18 PLIP interactions: 6 interactions with chain A, 12 interactions with chain B Hydrophobic interactions: A:M.179, B:F.62, B:F.67, B:F.67, B:L.92, B:T.101 Water bridges: A:R.122, A:R.122, A:R.122, A:R.122, B:R.37, B:M.65, B:M.65, B:N.103 Salt bridges: A:R.122, B:R.37 Hydrogen bonds: B:N.103, B:N.103

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.3: 7 residues within 4Å: Chain A: Q.58, K.59, C.60, F.62, I.88 Chain B: L.182 Ligands: GNB.2 No protein-ligand interaction detected (PLIP) BME.6: 6 residues within 4Å: Chain B: Q.58, K.59, C.60, F.62, K.84 Ligands: GNB.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cameron, A.D. et al., Reaction mechanism of glyoxalase I explored by an X-ray crystallographic analysis of the human enzyme in complex with a transition state analogue. Biochemistry (1999)

Release Date

1999-11-24

Peptides

PROTEIN (LACTOYLGLUTATHIONE LYASE): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEIN (LACTOYLGLUTATHIONE LYASE)

Related Entries With Identical Sequence