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SMTL ID : 1qip.2
(1 other biounit)
HUMAN GLYOXALASE I COMPLEXED WITH S-P-NITROBENZYLOXYCARBONYLGLUTATHIONE
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.72 Å
Oligo State
homo-dimer
Ligands
2 x
ZN
:
ZINC ION
(Non-covalent)
ZN.1:
4 residues within 4Å:
Chain A:
Q.33
,
E.99
Chain B:
H.126
,
E.172
5
PLIP interactions
:
2 interactions with chain B
,
1 interactions with chain A
,
2 Ligand-Water interactions
Metal complexes:
B:H.126
,
B:E.172
,
A:E.99
,
H
2
O.9
,
H
2
O.18
ZN.4:
4 residues within 4Å:
Chain A:
H.126
,
E.172
Chain B:
Q.33
,
E.99
5
PLIP interactions
:
2 interactions with chain A
,
1 interactions with chain B
,
2 Ligand-Water interactions
Metal complexes:
A:H.126
,
A:E.172
,
B:E.99
,
H
2
O.9
,
H
2
O.18
2 x
GNB
:
S-P-NITROBENZYLOXYCARBONYLGLUTATHIONE
(Non-covalent)
GNB.2:
17 residues within 4Å:
Chain A:
R.37
,
Q.58
,
C.60
,
F.62
,
F.67
,
L.69
,
I.88
,
L.92
,
T.101
,
N.103
Chain B:
R.122
,
M.157
,
L.160
,
F.162
,
W.170
,
M.179
Ligands:
BME.3
16
PLIP interactions
:
12 interactions with chain A
,
4 interactions with chain B
Hydrophobic interactions:
A:F.67
,
A:F.67
,
A:L.69
,
A:L.92
,
A:T.101
Hydrogen bonds:
A:N.103
,
A:N.103
Water bridges:
A:R.37
,
A:M.65
,
A:N.103
,
A:N.103
,
B:R.122
,
B:R.122
,
B:R.122
Salt bridges:
A:R.37
,
B:R.122
GNB.5:
19 residues within 4Å:
Chain A:
R.122
,
M.157
,
L.160
,
F.162
,
W.170
,
M.179
,
L.182
Chain B:
M.35
,
R.37
,
Q.58
,
C.60
,
F.62
,
F.67
,
L.69
,
I.88
,
L.92
,
T.101
,
N.103
Ligands:
BME.6
14
PLIP interactions
:
6 interactions with chain A
,
8 interactions with chain B
Hydrophobic interactions:
A:M.179
,
B:F.67
,
B:F.67
,
B:L.92
,
B:T.101
Water bridges:
A:R.122
,
A:R.122
,
A:R.122
,
A:R.122
,
B:R.37
Salt bridges:
A:R.122
,
B:R.37
Hydrogen bonds:
B:N.103
,
B:N.103
2 x
BME
:
BETA-MERCAPTOETHANOL
(Non-functional Binders)
BME.3:
5 residues within 4Å:
Chain A:
Q.58
,
K.59
,
C.60
,
F.62
Ligands:
GNB.2
No protein-ligand interaction detected (PLIP)
BME.6:
6 residues within 4Å:
Chain A:
M.183
Chain B:
Q.58
,
K.59
,
C.60
,
F.62
Ligands:
GNB.5
1
PLIP interactions
:
1 interactions with chain B
Water bridges:
B:D.61
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Cameron, A.D. et al., Reaction mechanism of glyoxalase I explored by an X-ray crystallographic analysis of the human enzyme in complex with a transition state analogue. Biochemistry (1999)
Release Date
1999-11-24
Peptides
PROTEIN (LACTOYLGLUTATHIONE LYASE):
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
B
D
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PROTEIN (LACTOYLGLUTATHIONE LYASE)
Related Entries With Identical Sequence
1fro.1
|
1fro.2
|
1qin.1
|
1qip.1
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