SMTL ID : 1qw9.1

Crystal structure of a family 51 alpha-L-arabinofuranosidase in complex with 4-nitrophenyl-Ara

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

homo-hexamer

Ligands

6 x KHP: 4-nitrophenyl alpha-L-arabinofuranoside(Non-covalent)

KHP.1: 11 residues within 4Å: Chain A: F.27, E.29, G.73, N.74, W.99, N.174, N.217, Y.246, E.294, W.298, Q.351 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.246 Hydrogen bonds: A:E.29, A:N.74, A:N.74, A:N.174, A:Q.351 Water bridges: A:N.74, A:Q.181, A:E.294 pi-Stacking: A:W.298 KHP.2: 12 residues within 4Å: Chain B: F.27, E.29, G.73, N.74, W.99, N.174, S.216, N.217, Y.246, E.294, W.298, Q.351 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:W.298 Hydrogen bonds: B:E.29, B:N.74, B:N.74, B:N.174, B:Y.246, B:Q.351 Water bridges: B:N.74, B:Q.181, B:S.216 KHP.3: 11 residues within 4Å: Chain C: F.27, E.29, G.73, N.74, W.99, N.174, N.217, Y.246, E.294, W.298, Q.351 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:Y.246 Hydrogen bonds: C:E.29, C:N.74, C:N.74, C:N.174, C:Q.351 Water bridges: C:N.74, C:Q.181, C:E.294 pi-Stacking: C:W.298 KHP.4: 12 residues within 4Å: Chain D: F.27, E.29, G.73, N.74, W.99, N.174, S.216, N.217, Y.246, E.294, W.298, Q.351 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:W.298 Hydrogen bonds: D:E.29, D:N.74, D:N.74, D:N.174, D:Y.246, D:Q.351 Water bridges: D:N.74, D:Q.181, D:S.216 KHP.5: 11 residues within 4Å: Chain E: F.27, E.29, G.73, N.74, W.99, N.174, N.217, Y.246, E.294, W.298, Q.351 10 PLIP interactions: 10 interactions with chain E Hydrophobic interactions: E:Y.246 Hydrogen bonds: E:E.29, E:N.74, E:N.74, E:N.174, E:Q.351 Water bridges: E:N.74, E:Q.181, E:E.294 pi-Stacking: E:W.298 KHP.6: 12 residues within 4Å: Chain F: F.27, E.29, G.73, N.74, W.99, N.174, S.216, N.217, Y.246, E.294, W.298, Q.351 10 PLIP interactions: 10 interactions with chain F Hydrophobic interactions: F:W.298 Hydrogen bonds: F:E.29, F:N.74, F:N.74, F:N.174, F:Y.246, F:Q.351 Water bridges: F:N.74, F:Q.181, F:S.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hoevel, K. et al., Crystal structure and snapshots along the reaction pathway of a family 51 alpha-L-arabinofuranosidase. Embo J. (2003)

Release Date

2003-10-07

Peptides

Alpha-L-arabinofuranosidase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Alpha-L-arabinofuranosidase

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