- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 4 residues within 4Å:- Chain A: E.59, R.93, H.101, D.110
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.59, A:H.101, A:D.110, A:D.110, H2O.113
MG.4: 5 residues within 4Å:- Chain A: E.59, D.61, D.110
- Ligands: MN.1, ATP.7
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.59, A:D.61, H2O.144, H2O.172
MG.11: 4 residues within 4Å:- Chain B: E.59, R.93, H.101, D.110
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.59, B:H.101, B:D.110, B:D.110, H2O.442
MG.12: 5 residues within 4Å:- Chain B: E.59, D.61, D.110
- Ligands: MN.9, ATP.15
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.59, B:D.61, H2O.473, H2O.501
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.7: 13 residues within 4Å:- Chain A: G.46, S.47, D.61, F.63, A.95, E.96, T.130, H.133, K.152, Y.161, G.172
- Ligands: MN.1, MG.4
13 PLIP interactions:13 interactions with chain A- Hydrogen bonds: A:S.47, A:S.47, A:E.96, A:H.133
- Water bridges: A:T.52, A:T.130, A:K.152, A:G.172, A:G.172, A:G.172, A:G.172
- Salt bridges: A:K.152, A:K.152
ATP.8: 7 residues within 4Å:- Chain A: K.303, R.310, Y.392, H.396, H.398, T.399
- Ligands: MN.2
16 PLIP interactions:16 interactions with chain A- Hydrogen bonds: A:R.310, A:Y.392, A:T.399
- Water bridges: A:R.299, A:R.299, A:K.303, A:K.303, A:K.303, A:R.310
- Salt bridges: A:K.303, A:K.303, A:R.310, A:H.396, A:H.396, A:H.396
- pi-Cation interactions: A:R.310
ATP.15: 13 residues within 4Å:- Chain B: G.46, S.47, D.61, F.63, A.95, E.96, T.130, H.133, K.152, Y.161, G.172
- Ligands: MN.9, MG.12
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:S.47, B:S.47, B:E.96, B:T.130, B:Y.161
- Water bridges: B:T.52, B:T.130, B:K.152, B:G.172, B:G.172, B:G.172, B:G.172
- Salt bridges: B:K.152, B:K.152
ATP.16: 7 residues within 4Å:- Chain B: K.303, R.310, Y.392, H.396, H.398, T.399
- Ligands: MN.10
15 PLIP interactions:15 interactions with chain B- Hydrogen bonds: B:R.310
- Water bridges: B:R.299, B:K.303, B:K.303, B:K.303, B:R.310, B:T.399, B:T.399
- Salt bridges: B:K.303, B:K.303, B:R.310, B:H.396, B:H.396, B:H.396
- pi-Cation interactions: B:R.310
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xiong, Y. et al., Crystal structures of an archaeal class I CCA-adding enzyme and its nucleotide complexes. Mol.Cell (2003)
- Release Date
- 2003-12-16
- Peptides
- tRNA nucleotidyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xiong, Y. et al., Crystal structures of an archaeal class I CCA-adding enzyme and its nucleotide complexes. Mol.Cell (2003)
- Release Date
- 2003-12-16
- Peptides
- tRNA nucleotidyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A