SMTL ID : 1ra6.1

Poliovirus Polymerase Full Length Apo Structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

8 x ACY: ACETIC ACID(Non-functional Binders)

ACY.1: 6 residues within 4Å: Chain A: S.28, I.401, W.403, T.404, T.410, H.413 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.404 Salt bridges: A:H.413 ACY.2: 4 residues within 4Å: Chain A: D.71, K.311, D.349, Y.350 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.349 Hydrogen bonds: A:Y.350 Salt bridges: A:K.311 ACY.3: 4 residues within 4Å: Chain A: K.375, M.392, L.417, L.420 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.417, A:L.420 Water bridges: A:R.376 Salt bridges: A:K.375 ACY.4: 2 residues within 4Å: Chain A: P.440, R.443 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.443 ACY.5: 1 residues within 4Å: Chain A: R.379 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.424 Salt bridges: A:R.379 ACY.6: 1 residues within 4Å: Chain A: H.270 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.270 ACY.7: 1 residues within 4Å: Chain A: P.222 No protein-ligand interaction detected (PLIP) ACY.8: 4 residues within 4Å: Chain A: A.357, S.360, E.364, N.370 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.360, A:E.364

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thompson, A.A. et al., Structural basis for proteolysis-dependent activation of the poliovirus RNA-dependent RNA polymerase. Embo J. (2004)

Release Date

2004-08-17

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

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