SMTL ID : 1ra7.1

Poliovirus Polymerase with GTP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 13 residues within 4Å: Chain A: K.159, R.163, K.167, R.174, L.175, I.176, Y.234, T.235, G.236, Y.237, D.238, S.288, D.328 29 PLIP interactions: 29 interactions with chain A Hydrogen bonds: A:K.61, A:R.174, A:L.175, A:L.175, A:L.175, A:Y.234, A:G.236, A:Y.237, A:D.238, A:D.238, A:S.288 Water bridges: A:K.159, A:K.167, A:K.167, A:T.235, A:G.236, A:D.238, A:N.297, A:D.328, A:D.328, A:D.328, A:D.328 Salt bridges: A:R.163, A:K.167, A:K.167, A:K.167, A:R.174 pi-Cation interactions: A:R.174, A:R.174

7 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 6 residues within 4Å: Chain A: S.28, I.401, W.403, T.404, T.410, H.413 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.403, A:T.404 Water bridges: A:K.405, A:T.410 Salt bridges: A:H.413 ACY.3: 3 residues within 4Å: Chain A: D.71, K.311, Y.350 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.350 Hydrogen bonds: A:Y.350 Salt bridges: A:K.311 ACY.4: 4 residues within 4Å: Chain A: K.375, M.392, L.417, L.420 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.417, A:L.420 Water bridges: A:R.376, A:R.376, A:E.396 Salt bridges: A:K.375 ACY.5: 2 residues within 4Å: Chain A: P.440, R.443 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.443 ACY.6: 1 residues within 4Å: Chain A: R.379 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.424 Salt bridges: A:R.379 ACY.7: 1 residues within 4Å: Chain A: H.270 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.270 ACY.8: 2 residues within 4Å: Chain A: P.222, I.388 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.222 Water bridges: A:A.380

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thompson, A.A. et al., Structural basis for proteolysis-dependent activation of the poliovirus RNA-dependent RNA polymerase. Embo J. (2004)

Release Date

2004-08-17

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

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