SMTL ID : 1re2.1

HUMAN LYSOZYME LABELLED WITH TWO 2',3'-EPOXYPROPYL BETA-GLYCOSIDE OF N-ACETYLLACTOSAMINE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

2 x NAG- GAL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-GAL.1: 12 residues within 4Å: Chain A: Q.58, I.59, N.60, Y.63, W.64, D.102, Q.104, A.108, W.109 Ligands: NAG-GAL.2, NAG-GAL.2, GOL.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.104, A:N.60, A:Y.63, A:Y.63, A:Q.104, A:A.108 NAG-GAL.2: 10 residues within 4Å: Chain A: Q.104, R.107, A.108, W.109, V.110, R.113 Ligands: NAG-GAL.1, NAG-GAL.1, GOL.3, GOL.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.104, A:Q.104, A:R.107, A:V.110

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: D.53, Q.58, N.60 Ligands: NAG-GAL.1, NAG-GAL.2, GOL.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:D.53 Water bridges: A:N.60 GOL.4: 7 residues within 4Å: Chain A: E.35, D.53, Q.58, W.109, V.110 Ligands: NAG-GAL.2, GOL.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.35 Hydrogen bonds: A:V.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muraki, M. et al., Dual affinity labeling of the active site of human lysozyme with an N-acetyllactosamine derivative: first ligand assisted recognition of the second ligand. Biochemistry (1999)

Release Date

1999-05-05

Peptides

PROTEIN (LYSOZYME): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN (LYSOZYME)

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